Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq12140 354 2e-95 seq12139 318 1e-84 seq4403 152 1e-34 seq177 91.5 3e-16 >seq12140 Length=1438 Score = 354 bits (392), Expect = 2e-95 Identities = 308/381 (81%), Gaps = 1/381 (0%) Strand=Plus/Minus Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62 || || |||||||||| || ||||||||| | ||| ||| ||||| |||| | Sbjct 1119 AGGGCGAAGAAGTGCAGCAGGCGTTCGGCGTGCAGTTCACCGTGGCGCTCGCGGTAATCG 1060 Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 || ||||||||| || | |||| || |||||||||||||| ||||||||||| ||||||| Sbjct 1059 TCGAGGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCATGCAGGCCATCGCCGCGCCCG 1000 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||||| |||| |||||||||||| || ||||| || || ||||| || ||| Sbjct 999 TCCTGGGGCATCAGCGACAGCGAATAACTGACATCGAGCATCCGCGCGAGGTTTTCCGCG 940 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATA-CTCAG 241 ||||||||||| |||||||||||||||| ||| | || ||||||| || |||| ||| Sbjct 939 CGCTCCAGGTAGCGCGACATCCAATACAAATCCGAGGCAGTTCTACTCAACATATTTCAA 880 Query 242 CCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAG 301 |||| |||||||||||||| || || || ||||| || ||||||||||| ||||||||| Sbjct 879 TCCTCGACCACCCAGGTGTCTTTAGTGCCGCCGCCCTGGGACGAGTTGACCACCAGCGAG 820 Query 302 CCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAG 361 |||||| ||||||||| || |||| ||| |||||||||| |||||||||||||| Sbjct 819 CCTTCCCGCAGCGCCACACGAGTCAGGCCGCCGGGCACCACACGGGTTTCCTTGCCTTGC 760 Query 362 AGCACGAAGGGTCGCAAGTCG 382 ||||| || || |||| |||| Sbjct 759 AGCACAAACGGGCGCAGGTCG 739 >seq12139 Length=617 Score = 318 bits (352), Expect = 1e-84 Identities = 202/219 (92%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 60 CTGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGC 119 ||||||||||||||||||||||||| |||||| |||| || ||||| || || |||||| Sbjct 219 CTGTCCAGGGTGCCGCTGCTGAGCAGCGACATGGCCAACTCGTCCAGCCCGTCACTGCGC 160 Query 120 CCGGCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCG 179 ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| Sbjct 159 CCGGCCTGGGGCATCAACGACAGCGAATAACTGACTTCCAGCATGCGCGCCAGGTTCTCG 100 Query 180 GCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATACTC 239 || |||||||||||||| |||||||||||||||||||| || ||||||| |||||||||| Sbjct 99 GCACGCTCCAGGTAACGGGACATCCAATACAGATCTGCGGCGGTTCTACTCAGCATACTC 40 Query 240 AGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTT 278 ||||||||||||||||||||||||||||||| ||||||| Sbjct 39 AGCCCTCCACCACCCAGGTGTCCTTGGTTCCGCCGCCTT 1 >seq4403 Length=10919 Score = 152 bits (168), Expect = 1e-34 Identities = 174/233 (75%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 153 ACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGA 212 || ||||||| || || | |||| || ||||| || || || | |||||| |||| Sbjct 3825 ACGTCCAGCACCCGGGCGTAGCTCTCCGCCCGCTCGAGATAGCGGGCCATCCAGAACAGT 3884 Query 213 TCTGCAGCTGTTCTACGCAGCATACTCAGCC---CTCCACCACCCAGGTGTCCTTGGTTC 269 || || || | || ||||| | | | ||||| ||||||||| |||||||||| Sbjct 3885 TCACTCGCCGTACGACTTAGCATGATGCGTCATCCTCCATCACCCAGGTATCCTTGGTTC 3944 Query 270 CACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGC 329 | ||||| |||||||||||||| |||||||| ||||| | || ||||||||||||| || Sbjct 3945 CGCCGCCCTGCGACGAGTTGACCACCAGCGACCCTTCGGTGAGGGCCACGCGGGTCAGGC 4004 Query 330 CACCGGGCACCAGGCGGGTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTCG 382 | ||||||||||| || | |||| || || |||||| |||| || || ||| Sbjct 4005 CGCCGGGCACCAGCCGCATCTCCTGCCCGGACAGCACGTAGGGGCGTAAATCG 4057 >seq177 Length=203703 Score = 91.5 bits (100), Expect = 3e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 238 TCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAG 297 |||| | || | |||||||||||||| || || || || || || ||||| || || Sbjct 46094 TCAGTCGTCGAGAACCCAGGTGTCCTTTGTCCCGCCTCCCTGGCTGGAATTGACAACGAG 46153 Query 298 CGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGC 337 ||||||||||||||||||||||||||||| ||| || ||| Sbjct 46154 CGAGCCTTCCTTCAGCGCCACGCGGGTCAGGCCGCCCGGC 46193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119683857600