Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq554 288 2e-75 seq140 286 8e-75 seq103 224 2e-56 seq5 122 2e-25 >seq554 Length=647 Score = 288 bits (318), Expect = 2e-75 Identities = 257/317 (81%), Gaps = 10/317 (3%) Strand=Plus/Minus Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 313 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAG 254 Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTG 202 |||||||| |||||||||||| |||||||| ||||||||||||||||||||||| | | Sbjct 253 ACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCCAACTAGCTAATCCGACATC 194 Query 203 GGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACG---TTATG 259 || ||||| | | |||||||||||||||| ||| || ||| | |||| Sbjct 193 GGCTCATCTATCCGCGCAAGGCCCGAAGGTCCCCTGCTT---TCACCCGAAGGTCGTATG 137 Query 260 CGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTA 319 |||||||||| |||||| |||||||||| | | ||| || |||| | ||| Sbjct 136 CGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGAAAAGGTAGATTCCGATGTATTC 77 Query 320 CTCACCCGTCCGCCACTCGTCA-GCGAAGCAGCAAGCTGCTTCCTGT--TACCGTTCGAC 376 ||||||||||||||||||| || || | |||||||| ||| |||| | ||||||||| Sbjct 76 CTCACCCGTCCGCCACTCGCCACCCGTAAGAGCAAGCT-CTTACTGTGCTGCCGTTCGAC 18 Query 377 TTGCATGTGTTAGGCCT 393 ||||||||||||||||| Sbjct 17 TTGCATGTGTTAGGCCT 1 >seq140 Length=166553 Score = 286 bits (316), Expect = 8e-75 Identities = 188/208 (90%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 4387 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 4446 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 4447 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 4506 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||| || Sbjct 4507 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCACC 4566 Query 184 AACTAGCTAATCCCATCTGGGTTCATCC 211 ||||||||||||| | ||| |||||| Sbjct 4567 AACTAGCTAATCCAACGCGGGCTCATCC 4594 >seq103 Length=5517 Score = 224 bits (248), Expect = 2e-56 Identities = 307/423 (73%), Gaps = 28/423 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCT-TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||| |||| ||| || ||||| | ||||||||||||||| |||| || | |||| Sbjct 745 TTTACGACCCAGAGGGCTGTCTTCCTGCACGCGGCATGGCTGGTTCAGAGTTCCCTCCAT 686 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 685 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 626 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| ||||||||||||||| | |||| |||||||||| |||||||| |||||||||| Sbjct 625 TGGGGGGTCATCCTCTCAGATCCCCTAGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCC 566 Query 184 AACTAGCTAAT----------CCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG-T 232 ||||||||||| |||||| || |||| ||| | | | || | Sbjct 565 AACTAGCTAATGACACGCATGCCCATC----TTAATCCTATAAATATTTGAACATTGGAT 510 Query 233 CCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292 || || || | ||||||||| ||| | |||| || ||||||| Sbjct 509 AATGCT-----ATCCTGTGTTTTTATGCGGTCTTAATCCGAATTTCTTCGGGCTATCCCC 455 Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351 || | ||| | ||| | | | |||| ||||||| ||||||| ||| ||| ||| Sbjct 454 CTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGCGCCACT-TTCA--TAAGAAGC 398 Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 |||| ||| | | |||||||||||||||| ||||||||||||| |||||||| || Sbjct 397 AAGCCTCTTAATCT---CGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCT 341 Query 412 GAG 414 ||| Sbjct 340 GAG 338 >seq5 Length=11203 Score = 122 bits (134), Expect = 2e-25 Identities = 126/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||| | || |||| |||| |||||||| |||||| ||||||||||||||||||||| Sbjct 3482 CACGTGATATTGCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCCCACTGCTGCCT-- 3539 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 | | ||| ||||| | | ||| ||||| |||||||| |||||||| |||| || ||| Sbjct 3540 CTAACGAGGTTGGACTTTATTTCAATTCCAATGTGGCTGATCATCCTCCCAGATCAACTA 3599 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 | ||| | | || | | ||| |||||| ||||||| ||||| Sbjct 3600 TGAATCCTTGGCTTGTTAGGCTTTTACCCTTCCAACTACCTAAT 3643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222054953152