Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq140 389 1e-105 seq103 223 1e-55 seq5 174 5e-41 seq554 143 8e-32 seq9766 111 5e-22 >seq140 Length=166553 Score = 389 bits (430), Expect = 1e-105 Identities = 376/480 (78%), Gaps = 20/480 (4%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGA-TAACATAC 80 ||||||| ||||||||||||||||||||| || || ||| | ||||| |||| | Sbjct 4706 GAGCGGCAGACGGGTGAGTAACGCGTGGG-AATCTACCCATCTCT-ACGGAATAACGCAT 4649 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 |||| || ||||||||| ||||| | ||| | ||| |||| || | Sbjct 4648 GGAAACGTGTGCTAATACCG-----TATACGTCCTTCGGGAGAAAGATTTATCGGAGAT- 4595 Query 141 CGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200 |||| ||||||| ||||||||||||||| ||||| ||| ||||||| Sbjct 4594 ----------GGATGAGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAG 4545 Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 ||||||||| |||| | |||||||| ||||| |||||| ||| |||||||||||| || Sbjct 4544 GCGACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCC 4485 Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 | |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 4484 AGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGC 4425 Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAAT 380 | |||||||||| |||||||||| | |||| |||||||||| || | ||||||||| Sbjct 4424 CATGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAAT 4365 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 ||||||| | || |||||||||||||||| |||||||||||||||||||||||| || Sbjct 4364 GACGGTAACCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAG 4305 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||||| | |||| ||||| |||||||||| | |||||| || | ||||||| Sbjct 4304 GGGGCTAGCGTTGTTCGGATTTACT-GGGCGTAAAGCGCACGTAGGCGGACTATTAAGTC 4246 >seq103 Length=5517 Score = 223 bits (246), Expect = 1e-55 Identities = 265/360 (74%), Gaps = 21/360 (6%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| | ||||||||||||| ||||||||| |||||||||||||| | ||| || | Sbjct 548 GCGTGTCATTAGCTAGTTGGCGGGGTAACGGCCCACCAAGGCGACGATGACTAGGGGATC 607 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||| | ||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 608 TGAGAGGATGACCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 667 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA- 339 ||| ||||||||| |||||| || |||| |||| | |||||||| || || Sbjct 668 AGTAAGGAATATTGGTCAATGGAGGGAACTCTGAACCAGCCATGCCGCGTGCAGGAAGAC 727 Query 340 AGGCCTTCGGGTCGTAAA--GCT-----------------CTGTCCTCAAGGAAGATAAT 380 || ||| |||||||||| ||| || || | | | || | Sbjct 728 AGCCCTCTGGGTCGTAAACTGCTTTTATTCGGGAATAAACCTTTCTACGTGTAGGAAGCT 787 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 || |||| |||| ||| ||||||||| |||||||||||||||||||||||| || Sbjct 788 GAATGTACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAG 847 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | ||||||||||||| ||| | ||| ||||||||||||||| || || ||||||| Sbjct 848 GATCCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGCGGCTTATTAAGTC 906 >seq5 Length=11203 Score = 174 bits (192), Expect = 5e-41 Identities = 199/265 (75%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| ||||||| | ||||| || || |||| | | ||| ||| || ||| |||| Sbjct 3643 ATTAGGTAGTTGGAAGGGTAAAAGCCTAACAAGCCAAGGATTCATAGTTGATCTGGGAGG 3584 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||||||||| ||| | | |||||| ||| | | |||||||||||||| Sbjct 3583 ATGATCAGCCACATTGGAATTGAAATAAAGTCCAACCTCGTTAG--AGGCAGCAGTGGGG 3526 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||||||| |||||| || |||| |||| |||||| | |||||| |||||| | Sbjct 3525 AATATTGGACAATGAGCGCAAGCTTGATCCAGCAATATCACGTGAGGGATGAA----ATA 3470 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGC 407 | | ||||| |||| | ||||||||||||||| | || || ||||||||||| Sbjct 3469 GAAT-GTAAACCTCTTTTAATAAGGAAGATAATGACAAGAATTATAGAAGAAGCCCCGGC 3411 Query 408 TAACTACGTGCCAGCAGCCGCGGTA 432 ||| | ||||||||||||||||||| Sbjct 3410 TAATTTCGTGCCAGCAGCCGCGGTA 3386 >seq554 Length=647 Score = 143 bits (158), Expect = 8e-32 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| |||||||||||||| ||||| ||| ||||||||||||||| ||||| | ||| Sbjct 197 GTCGGATTAGCTAGTTGGCGGGGTAAAGGCCCACCAAGGCGACGATCCGTAGCTGGTCTG 256 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 257 AGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 313 >seq9766 Length=280 Score = 111 bits (122), Expect = 5e-22 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || |||| ||||||||||||| |||| | ||||||||| || | |||||| | Sbjct 232 AGTGGCGAACGGGTGAGTAACACGTGAGCAACCTGCCCCTGACTCTGGGATAAGCGCTGG 173 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCCG 142 ||| | ||||||| |||| || | | |||||||| || | || Sbjct 172 AAACGGCGTCTAATACTGGATATGTGACGTG-ACCGCATGGTCTGCGTCTGGAAAGAATT 114 Query 143 GCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGC 202 |||| |||| | | |||| | || |||| |||||| |||||| |||| |||||||| Sbjct 113 TCGGTTGGGGATGGGCTCGCGGCCTATCAGCTTGTTGGTGAGGTAATGGCTCACCAAGGC 54 Query 203 GACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACAC 255 | ||| ||||||| ||||||||||||| |||||||| ||| |||||||||| Sbjct 53 GTCGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497177272448