Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq140 417 2e-114 seq103 298 1e-78 seq554 127 5e-27 seq26954 96.9 8e-18 seq5 93.3 1e-16 >seq140 Length=166553 Score = 417 bits (462), Expect = 2e-114 Identities = 334/400 (84%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 4351 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 4292 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||| ||||||||||||||| | |||||| || | ||||||||| ||||||| | Sbjct 4291 TTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGACTATTAAGTCAGGGGTGAAATCCC 4232 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||||||| ||||| ||||| |||| | || |||| | ||| || |||| Sbjct 4231 GGGGCTCAACCCCGGAACTGCCTTTGATACTGGTAGTCTTGAGTTCGAGAGAGGTGAGTG 4172 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4171 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 4112 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||| | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 4111 GCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 4052 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 |||||||||||||||||||||||| |||| |||| |||||| | || | || | || Sbjct 4051 ACCCTGGTAGTCCACGCCGTAAACTATGAGAGCTAGCCGTCGGGCAGTAT-ACTG-TTCG 3994 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| ||||||||||||| |||| ||| ||||||||||| Sbjct 3993 GTGGCGCAGCAAACGCATTAAGCTCTCCGCCTGGGGAGTA 3954 >seq103 Length=5517 Score = 298 bits (330), Expect = 1e-78 Identities = 304/394 (77%), Gaps = 12/394 (3%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| ||| Sbjct 811 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGGATTTA 870 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| ||||||||||||||| || || ||||||||| |||||||| | ||||||||| Sbjct 871 TTGGGTTTAAAGGGTGCGTAGGCGGCTTATTAAGTCAGGGGTGAAAGACGGTGGCTCAAC 930 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 | | | ||| |||| |||| | ||| || | || || || | | ||||| Sbjct 931 CATCGCAGTGCCCTTGATACTGATGAGCTTGAATACACTAGAGGTAGGCGGAATGTGACA 990 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 ||||||||||||||| ||||||| ||||||| | |||||||| |||| || Sbjct 991 AGTAGCGGTGAAATGCATAGATATGTCACAGAACACCGATTGCGAAGGCAGCTTACTATG 1050 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 ||| | |||| ||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1051 GTGTTATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGGTAG 1110 Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT--GCCGC- 375 |||||||| ||||||||||||||| | ||| | | ||| | | || || || Sbjct 1111 TCCACGCCCTAAACGATGAATACTCGCTGTTAGCG---ATA-----TACAGTTAGCGGCT 1162 Query 376 -AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || || |||||||||||||||||||||| Sbjct 1163 AAGCGAAAGCGTTAAGTATTCCACCTGGGGAGTA 1196 >seq554 Length=647 Score = 127 bits (140), Expect = 5e-27 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||||||||||||||||||| |||||||||||||| ||||||| | ||||||| | | Sbjct 490 GGAATTACTGGGCGTAAAGCGTGCGTAGGTGGTTGTTTAAGTCTGTTGTGAAAGCCCTGG 549 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 |||||||| || | ||| | || |||| |||||||| | || || ||||||| Sbjct 550 GCTCAACCTGGGAATTGCAGTGGATACTGGGCAACTAGAGTGTGGTAGAGGGTAGTGGAA 609 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGG 229 |||| ||||||| |||||||||||||| || ||||| Sbjct 610 TTCCCGGTGTAGCAGTGAAATGCGTAGAGATCGGGAGG 647 >seq26954 Length=321 Score = 96.9 bits (106), Expect = 8e-18 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 257 CGAAAGCGTGGGGTGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACAATG 314 >seq5 Length=11203 Score = 93.3 bits (102), Expect = 1e-16 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||| |||||| ||||||| | ||||||||||||||||||| |||||||||||| | Sbjct 3163 ACTGACGCTGAGGTACGAAAGCATAGGGAGCAAACAGGATTAGAGACCCTGGTAGTCTAT 3104 Query 324 GCCGTAAACGATGA 337 || ||||||||||| Sbjct 3103 GCAGTAAACGATGA 3090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202860372736