Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq103 430 4e-118 seq25 379 7e-103 seq140 307 4e-81 seq17903 168 2e-39 seq9976 123 8e-26 >seq103 Length=5517 Score = 430 bits (476), Expect = 4e-118 Identities = 440/564 (78%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | |||| || |||||| ||||||| ||||||||||||| Sbjct 3051 CGAGTCTGAATAGGGCGTATAGTCAGGGGAGGTAGACGCGAAACCTTGTGATCTACCCAT 3110 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| |||||||||||||||||| ||||||| ||||||| | || |||||||| | Sbjct 3111 GGACAGGTTGAAGGTGCGGTAACACGTACTGGAGGACCGAACCGATAAACGTTGAAAAGT 3170 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| |||||||||||||||||||||||| |||||| |||||||||| || ||| Sbjct 3171 TTCCGGATGATCTGTGGGTAGGGGTGAAAGGCTAATCAAACTGGGAAATAGCTCGTACTC 3230 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAG-TATCACCATCGGG-GGTAGAGC-ACTGTTA 237 |||||| | |||||| | || | || || || | |||||||| |||| | Sbjct 3231 CCCGAAATGTTTTTAGGAACAGCGTTGAGGTAAAGTTATTTAGAGGTAGAGCTACTGAT- 3289 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 ||| | |||| | | ||||||| | |||||||||||||| | | | | Sbjct 3290 TGGGTGCGGGGGAGTCAAATCCTACCAAATCCAGACAAACTCCGAATGCTAAATAATATA 3349 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | | ||||||| | ||||||||||||| | |||||||| ||||| || ||| Sbjct 3350 --CTCAGCAGTGAGGCCCGGGGTGCTAAGGTCACGGGCCGAGAGGGAAAGAACCCAGACC 3407 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||||| ||| || | || ||||||| ||||||||| || |||||| ||||| Sbjct 3408 ATCAGCTAAGGTCCCCAAGTTACTACTAAGTTGAACTAACGAGGTGCGATTGCATAGACA 3467 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3468 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 3527 Query 478 GAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG-ATCA 536 ||| ||| || |||||||||| |||| ||||||| || |||||||| |||| | | Sbjct 3528 GAGCGATCGTGCATGGATAATAAACGGGCATTAAGTAGTACACCGAAGCTATGGGTAATA 3587 Query 537 TTTATATGATCGGTAGGGGAGCAT 560 || |||| | |||||||||||||| Sbjct 3588 TTAATATTA-CGGTAGGGGAGCAT 3610 >seq25 Length=2002 Score = 379 bits (420), Expect = 7e-103 Identities = 378/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||||||| ||||||||||||| | |||||| |||| Sbjct 978 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 1037 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||| |||||||| | Sbjct 1038 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTACCGTTGAAAAGT 1097 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| |||||| | || |||||||||||| ||| || ||| ||||||||||||| Sbjct 1098 TAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 1157 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| || Sbjct 1158 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTGTAGGGGGTAGAGCACTGTTTCGG 1217 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTAC 299 |||||||||||| |||||||||||||| |||||||||||||| | | ||| | Sbjct 1218 CTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTACAAGTGCCGAG 1277 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 1278 CATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 1335 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 |||||||||| ||| || | | | ||||| | ||||| || || ||| ||||| Sbjct 1336 GTCAGCTAAGGTCCCAAAGTTATGGTTAAGTGGGA--AACGATGTGGGAAGGCTTAGACA 1393 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| |||||||| |||||||||| | |||||||| |||||| |||||||||||| Sbjct 1394 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 1452 Query 478 GAG 480 ||| Sbjct 1453 GAG 1455 >seq140 Length=166553 Score = 307 bits (340), Expect = 4e-81 Identities = 361/480 (75%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| |||||||||| |||| | || ||||||||||||||||||||||| |||| Sbjct 1679 CGAGTCTGAACAGGGCGTTCAGTTCGTCGGATTAGACCCGAAACCAAGTGATCTAGCCAT 1620 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | |||| ||||||| |||||||| ||||||| |||||||| | ||||| || | Sbjct 1619 GAGCAGGTTGAAGGTAAGGTAACACTTACTGGAGGACCGAACCCGCATCTGTTGCAATAG 1560 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||| ||||| |||||||||||||| || |||||||||| ||||||||||||| Sbjct 1559 ATTGGGATGACTTGTGGCTAGGGGTGAAAGGCCAATCAAACTTGGAGATAGCTGGTTCTC 1500 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAA--GTATCACCATCGGGGGTAGAGCACTGTTAT 238 ||||| |||||||||||| || || | | || ||| ||||||||||||||||| Sbjct 1499 CGCGAAATCTATTTAGGTAGAGCGTCGATCGAAT-ACCTTCGGGGGTAGAGCACTGGATG 1441 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTT 297 ||||||||| || ||| |||||||||| |||||||||||| | | ||| | Sbjct 1440 GGCTAGGGGATCTCACCGATTTACCAAACCTAACCAAACTCCGAATACCGAAGAGTACTA 1381 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | || || | ||| ||||||||| |||||| ||||| || || || ||| Sbjct 1380 ATCGGCAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGCAACAACCCTGACC 1323 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 | || |||||| ||| || | | ||||||| | || || || | | | || ||| Sbjct 1322 ACCATCTAAGGTCCCTAAGTTATGGCTAAGTGGGA--AAGGATGTGAGGATCCCAAAACA 1265 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 | ||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 1264 ACCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAACAGCTCACTGGTC 1206 >seq17903 Length=272 Score = 168 bits (186), Expect = 2e-39 Identities = 146/180 (81%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||| || |||||||||||||| |||||||| ||| Sbjct 183 CGAGTCTGATAAGGGCGCATAGTCGCGGGCAGTAGACCCGAAACCGGGTGATCTAGTCAT 124 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||||| |||||| | ||||||| |||||||||| ||||| |||| Sbjct 123 GGCCAGGGTGAAGGTGCCGTAACAGGTACTGGAGGCCCGAACCCACGTCTGTTGCAAAAG 64 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||||||||||| |||| |||||| ||||| | ||| ||| ||||||||||||| Sbjct 63 ACGGGGATGAGCTGTGATTAGGAGTGAAAAGCTAATCGAACCCGGAGATAGCTGGTTCTC 4 >seq9976 Length=1608 Score = 123 bits (136), Expect = 8e-26 Identities = 274/403 (68%), Gaps = 15/403 (4%) Strand=Plus/Minus Query 139 TAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGT 198 |||||||||||||| || ||||||| | |||||||||||||||||||| |||||||| Sbjct 1608 TAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCTCTCCGAAATGCATTTAGGT 1549 Query 199 AGTGCCTCAAGTATCACCATCGGG-GGTAGAGC-ACTGTTATGGCTAGGGGGTCATT--- 253 || | || | | | || |||||||| |||| ||||| ||| | | Sbjct 1548 GCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTGG-ATGGCCGATGGGCCCTACAA 1490 Query 254 -GCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGG 312 | ||| || | | |||||||||||||| | ||| | ||||| |||||| Sbjct 1489 GGTTACTGACGTCAGC----CAAACTCCGAATGCCGGTGAGTGAGAGCGCGGCAGTGAGA 1434 Query 313 GCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCC 372 ||| | |||||| ||| ||||||| || | || || ||||||||| ||| Sbjct 1433 CTGCGGGCGATAAGGTTCGTAGTCGAGAGGGAAACAGCCCAGATCGCCAGCTAAGGTCCC 1374 Query 373 GAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCT 432 || | |||||| || || || || | | || |||||| | |||| ||||||| Sbjct 1373 TAAGCGTGTACTAAGTGGAA--AAGGATGTGGGGTCGCGAAGACAACCAGGAGGTTGGCT 1316 Query 433 TGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTG 492 | |||||||||| | || ||||||||||||| |||||||| ||| || || ||| Sbjct 1315 TAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGGTCAAGTGATCCTGCGCC 1257 Query 493 GATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 || ||| | |||| | |||| | |||||||| | || || Sbjct 1256 GACAATGTAGCGGGGCTCAAGTACACCACCGAAGCTGCGGCAT 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689123076608