Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq22675 230 8e-58 seq112 201 4e-49 seq23894 179 1e-42 seq9757 145 2e-32 >seq22675 Length=369 Score = 230 bits (254), Expect = 8e-58 Identities = 236/300 (79%), Gaps = 14/300 (5%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 73 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACAG 132 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| ||||||||| |||||||||| ||||||||||||||| | ||| ||| Sbjct 133 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCATCGATGCGGGTCG 192 Query 128 ---GCCCG-CGA-AGGA---CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGC 178 ||||| ||| ||| ||||||| ||| ||| | | | | ||| || ||||| Sbjct 193 ACCGCCCGCCGAGCGGACAGCCTTAACACCAAAAACAAGAACAATAAAGTTCAATTCCGT 252 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--TTGCGCCGAAACGG 236 || || || ||||||| || |||||| ||||||||||||||| ||| ||| || | Sbjct 253 TTTATCGAATAAGTAAGGAATCGATAAAAGTAGTGGTATTTCACCGTTG-GCC--AAAGC 309 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||| Sbjct 310 CTCCCACTTATACTACACCTCTCATGATTCTTCACAAAGTCAGACTAGAGTCAAGCTCAA 369 >seq112 Length=13817 Score = 201 bits (222), Expect = 4e-49 Identities = 116/119 (97%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 5491 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGC 5550 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 5551 TAGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAA 5609 Score = 199 bits (220), Expect = 1e-48 Identities = 172/210 (82%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 204 AAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGT 263 ||||| |||||||||||||| | | | ||||||| ||||||||||| | || Sbjct 4392 AAGGG--GTGGTATTTCACTTTTG--GTTGCC-CTCCCACCTATTCTACACCAACCGGGT 4446 Query 264 CATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG 323 || | ||| || ||||||||||||||||||||||||||||||||||||||| | Sbjct 4447 CACTATGCAATATCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTAATGG 4506 Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 || |||||||||| || ||||||||||||| ||||||| ||||||||||||||||||| Sbjct 4507 TCAGGCCCGTTCCCCTGACTGTGGTTTCGCTGTATAGTAGTTAGGGACAGTGGGAATCTC 4566 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAG 413 || |||||||||||||||||||||||||| Sbjct 4567 ATTGATCCATTCATGCGCGTCACTAATTAG 4596 Score = 131 bits (144), Expect = 5e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||| | |||| | |||||||||||| |||||||| Sbjct 4122 CTTTTACTCTACGTGAGATTTCTGTTCCCACTGAGCCACCCTTAGGACACTTGCGTTATT 4181 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||| ||||||||||||||||||||||||||||||| | |||| Sbjct 4182 TTTTAACAAATGTGCCGCCCCAGCCAAACTCCCCACCTGAAACTGTC 4228 >seq23894 Length=420 Score = 179 bits (198), Expect = 1e-42 Identities = 105/109 (96%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 420 ACAGGGTCTTCTTTCCCCGCTAAGTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 361 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 312 >seq9757 Length=1733 Score = 145 bits (160), Expect = 2e-32 Identities = 101/114 (89%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 ||||| ||||||||||||||||||| | ||||||| ||||||| |||||||| || ||| Sbjct 1521 CGAGGTATTTGGCTACCTTAAGAGAATAATAGTTAGTCCCGCCTTTTACCCGTGCAAGGT 1462 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||| |||||||||| |||||||| |||||||||||||| ||||| Sbjct 1461 TGAATTTCTTCA--TTGACATTCAAAGCACTGGACAGAAATCACATTGGGTCAA 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634738432096