Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq140 434 4e-119 seq103 333 9e-89 seq9976 241 4e-61 seq552 223 1e-55 seq1498 190 7e-46 >seq140 Length=166553 Score = 434 bits (480), Expect = 4e-119 Identities = 437/566 (77%), Gaps = 23/566 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| || ||| ||| || ||||| || ||| |||| | Sbjct 63 TCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGACC-GATTTC 121 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| ||| | | ||||||||||||| ||| ||||| | ||||||||| Sbjct 122 CGACCGGTCTGAGCCCACCATCGCGCGCCTCCGTTACTCTTTAGGAGG-CGACCGCCCCA 180 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||||||||||| ||||||||| | || ||| | || || ||||||| ||||| Sbjct 181 GTCAAACTACCCACCATACACTGTCCCGGATCCGGATAACGGACCGCGGTTAGACATCCA 240 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 ||| || |||||||||||| | |||||||| | || ||| |||| ||| || Sbjct 241 TATAGGTAAGGGTGGTATTTCAAGGATGACTCCACGAAGGCTGGCGCCCCCGCTTCAAAG 300 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||| |||||||||||||||| ||| ||||||||| | |||||||||| ||||| | Sbjct 301 TCTACCACCTATCCTACACATGCCGACACGAATGCCAGTGTAAAGCTATAGTAAAGGTGC 360 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| Sbjct 361 ACGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACT 420 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | | ||| | | |||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 421 GAGTCTGCGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 480 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 481 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 540 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 | ||| || | | | ||| ||||||||||||||||||||| Sbjct 541 CGATT----------CAAAGCTTG---------CACCTCTCCTCTTAACCTTCCAGCACC 581 Query 539 GGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| || ||||| ||| Sbjct 582 GGGCAGGCGTCAGACCCTATACGTCG 607 >seq103 Length=5517 Score = 333 bits (368), Expect = 9e-89 Identities = 416/568 (73%), Gaps = 27/568 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||| ||||| | ||| ||||||||| ||| ||| || ||||| || | || || Sbjct 4751 TCGGCTTGTCTGCCTCACAGTCAAGCAAGCTTATGCTATTGCACTCCTCATACGGTTACC 4692 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | |||| ||||||| ||||||||||| |||| ||||| | ||| |||||| Sbjct 4691 AAGCGTATTGAGCTTACCTTTGAAAGCCTCCGTTACCTTTTTGGAGG-CGACCACCCCAG 4633 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||| || || ||||| | | || | |||||| | | | Sbjct 4632 TCAAACTACCCATCAAACAATGTCCTCCGACTAGCGGA---------GTTAGACACCGAA 4582 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 ||| | || ||||||||||||| |||||||| || |||||| ||||| ||||||| Sbjct 4581 TACAGAAAGGGTGGTATTTCAACGTTGACTCCACGACGCCTAGCGACGCCGCTTCATAGT 4522 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||||||||||| | | | | |||| |||| || | |||||||||| | Sbjct 4521 CTCCCACCTATCCTACACATCCTGTATCCAATGTCAATGTTAAATTGTAGTGAAGGTGCA 4462 Query 301 -GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| ||||| | ||| | | | || |||| || | || ||||||||||| Sbjct 4461 TGGGGTCTTTCCGTCCCGTTGCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCG 4402 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 || ||| ||||||||| | || ||||||| ||||||||||||||||||||||||| Sbjct 4401 AGCTCATGGCTGAGACAGC-GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACC 4343 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 4342 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 4283 Query 479 CAATTACCCGCCTCACACACCACGTGGTGT---GCTCACGAGTCCTCTTAACCTTCCAGC 535 | ||| || || ||| | || || ||||||||||||||||| Sbjct 4282 CGATTCAATGCTTC-----------GGTTTAACCCTAACATCCCCTCTTAACCTTCCAGC 4234 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||| ||||| || ||||| || Sbjct 4233 ACCGGGCAGGTGTCAGGCCTTATACTTC 4206 >seq9976 Length=1608 Score = 241 bits (266), Expect = 4e-61 Identities = 183/216 (85%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 187 CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCA 246 ||| |||||||||||| | |||||| ||| |||| ||| ||| | |||||| Sbjct 37 CAGGGTGGTATTTCAAGGTTGGCTCCACGCGAACTGGCGTCCACGCTTCAAAACCTCCCA 96 Query 247 CCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCGGGGTC 306 |||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||| Sbjct 97 CCTATCCTACACAAGCCACACCGAACACCAATACCAAGCTGTAGTGAAGGTCCCGGGGTC 156 Query 307 TTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGT 366 |||||||||||||||||| |||||||||||||||||||| ||||||||| ||| | || Sbjct 157 TTTTCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCGCCGAGTCTAC 216 Query 367 GGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTG 402 |||||||||||| | | ||||||||||||||||||| Sbjct 217 GGTTGAGACAGCTGAGAAGTCGTTACGCCATTCGTG 252 >seq552 Length=650 Score = 223 bits (246), Expect = 1e-55 Identities = 302/411 (73%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| ||||||||||||||| | ||| ||| ||| |||| || ||| |||| | Sbjct 406 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACC-GATTTC 348 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| | ||||| | | |||||||||| ||| ||| || ||||||||| Sbjct 347 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGA-GGAGACCGCCCCA 289 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||||||||||| |||||||| | | || ||| | || || ||||| | || Sbjct 288 GTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAG--AACCT 231 Query 180 CTACG--GTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | | | ||| |||||||||||| | |||||| ||| |||| ||| ||| Sbjct 230 CAAAGTTGCCAGGGTGGTATTTCAAGGTTGGCTCCACGCGAACTGGCGTCCACGCTTCAA 171 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG- 296 || |||||||||||||||||||| | | || ||| | | |||||||||| |||| Sbjct 170 AGCCTCCCACCTATCCTACACAAGCAAATTCAAAGTCCAGTGCAAAGCTATAGTAAAGGT 111 Query 297 TCCCGGGGTCTTTTCGTCCTGCCGCGCGAAAC-GAGCATCTTTACTCGTACTGCAATTTC 355 || |||||||||| |||| |||||| || || ||||||| || | | ||||||| Sbjct 110 TCACGGGGTCTTTCCGTCTAGCCGCG-GATACACTGCATCTTCACAGCGATTTCAATTTC 52 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGG 406 || | | || ||| |||||||| | ||||||||||||||||||||| Sbjct 51 ACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGG 1 >seq1498 Length=998 Score = 190 bits (210), Expect = 7e-46 Identities = 149/181 (82%), Gaps = 19/181 (10%) Strand=Plus/Minus Query 384 AGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 AGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 937 Query 444 ATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGT 503 | ||||||||||| |||||||||||||||||||| ||| || | | | Sbjct 936 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATT----------CAAAGCTTG- 888 Query 504 GGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 887 --------CACCTCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATC 836 Query 564 G 564 | Sbjct 835 G 835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701919463552