Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq103 307 2e-81 seq140 190 4e-46 seq554 122 2e-25 seq5 109 1e-21 >seq103 Length=5517 Score = 307 bits (340), Expect = 2e-81 Identities = 256/313 (82%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||| ||||||| | ||||||| || ||| |||||| Sbjct 833 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTACATTCAGCTTCCTACACGT 774 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| | ||||||||| ||||||| ||||||| | || || | || |||| ||||| Sbjct 773 AGAAAGGTTTATTCCCGAATAAAAGCAGTTTACGACCCAGAGGGCTGTCTTCCTGCACGC 714 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||||||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 713 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 654 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| |||||||| | |||||||||| |||||| ||| Sbjct 653 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCTAGTCAT 594 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || ||||||||||||||||||| |||| |||||| |||||| |||||| || Sbjct 593 CGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTAAT 534 Query 301 CCGATGAATCTTT 313 || || ||| ||| Sbjct 533 CCTATAAATATTT 521 >seq140 Length=166553 Score = 190 bits (210), Expect = 4e-46 Identities = 182/232 (78%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || ||| |||||||| |||||| | ||||||| |||| || Sbjct 4381 AAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 4439 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 4440 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 4499 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||| ||||| || | |||||||||| | |||| ||||| | || ||| |||| ||| Sbjct 4500 CCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTA 4559 Query 262 CCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 |||| || |||| ||||| ||||| | |||| | ||||| ||||||| Sbjct 4560 CCCCACCAACTAGCTAATCCAACGCGGGCTCATCCATCTCCGATAAATCTTT 4611 >seq554 Length=647 Score = 122 bits (134), Expect = 2e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 168 CTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAG 227 ||||||||||||||||| |||||||||||||||||||| ||||| || | ||||||||| Sbjct 313 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAG 254 Query 228 AACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | ||| ||||| | || |||||||| |||||||||| |||| ||||| Sbjct 253 ACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCCAACTAGCTAAT 202 >seq5 Length=11203 Score = 109 bits (120), Expect = 1e-21 Identities = 149/206 (72%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 75 CCTTAT-AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTT 133 |||||| |||||| ||||||| || | ||||||| ||||| | | ||||| | Sbjct 3446 CCTTATTAAAAGAGGTTTACATTCTAT------TTCATCCCTCACGTGATATTGCTGGAT 3499 Query 134 CAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGT 193 || || || ||||| |||||||||| |||||||||||| | ||| |||||| | Sbjct 3500 CAAGCTTGCGCTCATTGTCCAATATTCCCCACTGCTGCCTCTA--ACGAGGTTGGACTTT 3557 Query 194 GTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTG 253 | ||| ||||||||||| || | ||||| |||| | |||| ||| | |||| | | Sbjct 3558 ATTTCAATTCCAATGTGGCTGATCATCCTCCCAGATCAACTATGAATCCTTGGCTTGTTA 3617 Query 254 GGCCGTTACCCCGCCTACTACCTAAT 279 ||| |||||| || |||||||||| Sbjct 3618 GGCTTTTACCCTTCCAACTACCTAAT 3643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068498309824