Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq8951 307 3e-81 seq112 241 4e-61 seq22217 80.6 8e-13 >seq8951 Length=1340 Score = 307 bits (340), Expect = 3e-81 Identities = 310/397 (78%), Gaps = 7/397 (2%) Strand=Plus/Plus Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 ||||||||||||||||||||| ||||| || || || ||| |||||||||| || ||||| Sbjct 945 GTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCATTTCTCAGGCCCCTTCTCC 1004 Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197 ||| |||||||||||||| ||||||||||| | |||||||||| ||| || ||||||| Sbjct 1005 GGAGTCGAACCCTAATTCTCCGTTACCCGTCAACACCATGGTAGTCCAATACACTACCAT 1064 Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA-AGGCCATGCGATTC 256 ||| | |||||| |||||| | | | |||| | ||||||| ||| || || |||||| Sbjct 1065 CGACAATTGATAAGGCAGATACTCGTATGACACGTCGCCGGTTCATAGACCGTGCGATCA 1124 Query 257 GTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAAT 316 | ||||||||| ||| ||| ||| | | || | || | | |||| |||||||||| Sbjct 1125 GCTAAGTTATTCTGAGTCAGCAAAACACGACCAAAGCCGCTTGGTTTTGCTCTAATAAAT 1184 Query 317 ACACCCCTTCCG--AAGTC-GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 ||| | ||||| | ||| | | ||| |||||||||||||||||||||||||| ||| Sbjct 1185 GCACTCTTTCCGCTAGGTCAGAGCTTTAGCGCATGTATTAGCTCTAGAATTACCACAGTT 1244 Query 374 ATCCATGTA--GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 ||||| ||| | | | ||||| || | ||| ||||||||||||||| ||||| | Sbjct 1245 ATCCAAGTAACTTGTGTCAAAATCAAGTAGATAATAGCTGATTTAATGAGCCGTTCGCGG 1304 Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 |||||| || | || | ||||||||||||||||||| Sbjct 1305 TTTCACGATA-AAATCGTTTATACTTAGACATGCATG 1340 >seq112 Length=13817 Score = 241 bits (266), Expect = 4e-61 Identities = 160/178 (90%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 38 ATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGC 97 || |||||||||||||||||| ||||||| | ||||||| |||||||||||||||||||| Sbjct 11146 ATTAGTATTTATTGTCACTACTTCCCCGTATTGGGATTGAGTAATTTGCGCGCCTGCTGC 11205 Query 98 CTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 ||||| | || ||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 11206 CTTCCGTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCC 11265 Query 158 CGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||| ||||||| |||||||||||||| || | ||||||| |||||||||||||||| Sbjct 11266 CGTCACCCGTTACAACCATGGTAGGCCAATACCGTACCATCCAAAGTTGATAGGGCAG 11323 Score = 132 bits (146), Expect = 1e-28 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 || |||| | ||||||||| | ||||||||||| ||||| | | ||||||||||||||| Sbjct 11523 ATCACTGTTGTAATGAGCCGTCCGCAGTTTCACCGTATAAAG-GTTTATACTTAGACATG 11581 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| Sbjct 11582 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 11621 >seq22217 Length=718 Score = 80.6 bits (88), Expect = 8e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 ||||||||||||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 7 TTATACTTAGACATGTATGGCTTAATCTTTGGGACAAGTATATGACTACTGG 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509973659392