Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq2100 179 1e-40 seq345 178 3e-40 seq3094 143 7e-30 seq12 96.9 9e-16 >seq2100 Length=19628 Score = 179 bits (198), Expect = 1e-40 Identities = 349/512 (68%), Gaps = 4/512 (1%) Strand=Plus/Plus Query 37702 AAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAA 37761 |||| | ||||| || ||| |||||| | || | ||||||| ||| | || || || Sbjct 19119 AAAAAATGACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAA 19178 Query 37762 CTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTA 37821 | | || || || || ||||| ||||| || || | ||| | ||||||||||| | Sbjct 19179 CCTGCAGGAAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCA 19238 Query 37822 TGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGT 37881 ||||||||| ||||| | | ||||| || ||| || |||| |||| ||||| ||| Sbjct 19239 TGAACTGCTGTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGT 19298 Query 37882 GACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCA 37941 || || ||||| ||||||||||| || || ||||| || || ||| | |||||| || Sbjct 19299 CACCATCTGGGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTACGGCAAACA 19358 Query 37942 ATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC-GCATGGGTTGTCG 38000 ||||| || ||| | | || || |||||||||||| ||| || || | Sbjct 19359 GTGGCGTTCCTGGCCTGCGCCGGATGGCCGCCATATCGACCAGATCAGCACGG--TGATG 19416 Query 38001 AA-GAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCA 38059 || || | ||| | ||| | || |||||| | | || || ||||| || | Sbjct 19417 AACCAGCTGAAAAACGACCCGGACTCCCGCCGGATCATCGTCTCGGCATGGAACGTCGGC 19476 Query 38060 GAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAAC 38119 || |||| | ||| |||| ||||||| || | ||| |||||||| |||||| || Sbjct 19477 GAGCTGGATAAAATGGCGCTGGCGCCGTGCCACGCCTTCTTCCAGTTCTACGTCGCCGAC 19536 Query 38120 GGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTT 38179 ||| | | || ||| | | | ||||| ||| ||| ||| | || ||||||| Sbjct 19537 GGCAAGCTCTCCTGCCAGCTGTATCAGCGTTCCTGCGATGTGTTCCTCGGCCTGCCGTTC 19596 Query 38180 AACATCGCGAGCTACGCGCTGTTGACGCATAT 38211 || ||||| ||||| |||||| || |||||| Sbjct 19597 AATATCGCCAGCTATGCGCTGCTGGTGCATAT 19628 >seq345 Length=175672 Score = 178 bits (196), Expect = 3e-40 Identities = 356/528 (67%), Gaps = 0/528 (0%) Strand=Plus/Plus Query 37693 CGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCT 37752 ||||||||| | ||||| || || ||||| | || || |||||| |||| | Sbjct 150389 CGGCGTCGACCGCGGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGAT 150448 Query 37753 CCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTC 37812 || ||| | | | || ||||| | |||| || || ||| ||||| || || Sbjct 150449 GCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATC 150508 Query 37813 CATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGA 37872 |||||| | || ||||| ||||| | |||||||| |||||| || |||| | |||| Sbjct 150509 CATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGA 150568 Query 37873 GAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTA 37932 || ||||||||||| |||||||| ||||| ||||| |||||||||||||| ||| | || Sbjct 150569 AAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTA 150628 Query 37933 CGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATG 37992 ||| || |||||||| ||| | | ||||| ||||| ||||| || Sbjct 150629 TGGCTATCAGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCAGATTGCGAA 150688 Query 37993 GGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAA 38052 | ||| | ||| || | |||||| |||| || || ||| | || ||| ||||| Sbjct 150689 TCTCGTCAGTGCGATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAA 150748 Query 38053 TGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGT 38112 | || | || || ||| ||||||||| || || | | || |||||||| || Sbjct 150749 TCCGGCGCTCGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGT 150808 Query 38113 CGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTT 38172 ||| |||| | | || ||| | | |||||||||| |||| ||| | || | Sbjct 150809 GGCCGACGGAAAGCTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGT 150868 Query 38173 GCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCA 38220 |||||| || ||||| ||| || ||| |||| | ||||| || || Sbjct 150869 GCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 150916 >seq3094 Length=9505 Score = 143 bits (158), Expect = 7e-30 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38255 ACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACG 38314 ||||||||||| ||| |||||| || ||||| || || | || |||||||| | Sbjct 9499 ACCGGCGGCGATACCCACCTGTACAGCAACCATCTTGAGCAGACCAACCTGCAGCTAAGC 9440 Query 38315 CGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTCTATCTTTGAC 38374 ||||| ||||| |||||||||||||| || | ||||| |||||| |||| || || ||| Sbjct 9439 CGCGAACCGCGTCCGCTGCCGAAGCTGGTCATCAAACGCAAGCCGGCGTCGATTTTCGAC 9380 Query 38375 TATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCG 38434 || | || ||||| || || | || |||||||||||||||| |||||||| ||| Sbjct 9379 TACCGCTTTGAAGACTTCGAGATTGAAGGTTACGATCCGCATCCGGGCATTAAAGCGCCG 9320 Query 38435 GTGGCGGTTTAA 38446 |||||| ||||| Sbjct 9319 GTGGCGATTTAA 9308 >seq12 Length=339259 Score = 96.9 bits (106), Expect = 9e-16 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 37739 TTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAA 37798 || |||| ||| | | |||||| | || || || ||||| || || || || |||||| Sbjct 190702 TTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAA 190761 Query 37799 TTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTC 37858 | ||| | ||||| || | |||||| | |||||||||| || || || || | Sbjct 190762 CTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATT 190821 Query 37859 CGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGAT 37918 |||| || | | || || | ||| |||||||||||||| || |||||||| || Sbjct 190822 GGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGAC 190881 Query 37919 CTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGG 37954 || ||||| |||| || | |||||||| || ||| Sbjct 190882 CTGGGCCCTGTTTATGGATCACAATGGCGTTCATGG 190917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130596210043550