Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq19 302 1e-77 seq164 217 5e-52 seq102 114 4e-21 seq15666 95.1 4e-15 >seq19 Length=770976 Score = 302 bits (334), Expect = 1e-77 Identities = 823/1252 (66%), Gaps = 30/1252 (2%) Strand=Plus/Minus Query 1684 GATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGT- 1742 ||||| | || || || | ||||| || |||||||| || || |||| ||||| || Sbjct 378294 GATGTTCATGCGCGGCAAATACTTGATTCCCGCGGTAATCCTACTATTGAGGTAGACGTA 378235 Query 1743 -TTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTG 1801 ||||| |||| |||| | || || | || |||||||| || ||||| |||| Sbjct 378234 ATTACAGAGAATGGTGTGCTT--GGCCGTGCAGCAGTACCTTCAGGTGCTTCAACGGGTG 378177 Query 1802 AACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTC 1861 |||||||| ||||| ||| | || ||| ||| || || || ||| | Sbjct 378176 TTCACGAAGCCGTAGAGCTTAGGGACAATGATAAATCTGTATATATGGGCAAAGGTGTTT 378117 Query 1862 AAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTAC 1921 |||||| |||| ||||| ||| | ||||| || | | | ||| | || ||| Sbjct 378116 TAAAAGCTGTTGCCAACGTTAACGATAAGATTGCCGATGCCTTAAAAGGAGTGGATGTAT 378057 Query 1922 GTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTA 1981 ||| ||| | | || || | ||||||| || || || || ||| ||||| | Sbjct 378056 TTGAGCAAAATGCGATCGATGACCTAATGATCAAACTGGATGGCACAGAAAATAAAGGAA 377997 Query 1982 AACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACT 2041 |||| |||||||| || ||| | ||||| ||| | || || || |||||||| | Sbjct 377996 AACTGGGTGCCAATGCCATTTTAGGTGTTTCTTTAGCCGTGGCTAAAGCAGCTGCACAGG 377937 Query 2042 A---CCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAA 2098 | || | | ||| | ||| | || |||| || | || | || || || | Sbjct 377936 AAAGCCGTCAG---CCATTATACCGTTATATTGGTGGTGTAAATGCCAATACCCTGCCCA 377880 Query 2099 CTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAG 2158 ||||||||||||||| | ||||| ||||||||||| || || || || ||||| || | Sbjct 377879 TCCCAATGATGAACATCGTAAACGGCGGTTCTCACTCTGATGCCCCTATTGCTTTTCAGG 377820 Query 2159 AATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTG 2218 |||||||||| | || | |||||| | | || ||||| | | ||||| | | Sbjct 377819 AATTTATGATCATGCCAGTTGGTGCGACTTCTTTTTCCGAAGCCTTAAGATGGGGAACAG 377760 Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTG 2278 || | || ||| || || || | | || | || ||| || || ||||||| Sbjct 377759 AAGTATTTCACAACCTGAAAGCCATTTTACATGACAGGGGCCTTTCTACGGCTGTAGGTG 377700 Query 2279 ACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCA 2338 ||||||||||||| || || ||| || || |||||||||| || ||||| || | | Sbjct 377699 ACGAAGGTGGTTTTGCCCCAACTTTTGATGGTACTGAAGATGCAGTGGAAACCATTCTTA 377640 Query 2339 AAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTG 2398 |||| |||||| || || || ||||||| | | | | | | ||||||| | Sbjct 377639 AAGCCATCGAAAAAGCAGGTTACAAACCAGGTGAGCAAATCTGCCTTGCTTTTGACTGCG 377580 Query 2399 CATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTG 2458 || | |||||||| ||| | ||| | ||| ||||| || || ||||||||||| | Sbjct 377579 CAGCCTCTGAATTTTACAA---AGACGGCAAA---TACGATTATACAAAATTTGAAGGCG 377526 Query 2459 AAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACA 2518 | | ||| ||||| | ||| ||||| || ||||| | | || || Sbjct 377525 ATAAAGGTGCCGTTCGCAGCAGTGCTGAACAGGCAGAATACCTGGCTCAGCTGTCAGCCA 377466 Query 2519 AATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAAT 2578 |||| ||||||||| |||| |||||||| |||| |||| | ||||||| || ||||||| Sbjct 377465 AATATCCAATCATCTCTATTGAAGATGGAATGGCCGAAGATGACTGGGCTGGCTGGAAAT 377406 Query 2579 CTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC-- 2636 || || ||| | |||| |||||| |||| || || || || || ||||| Sbjct 377405 TGCTGACCGAAAAAATCGGTGACCGCGTTCAACTGGTAGGAGATGATTTGTTTGTAACCA 377346 Query 2637 ---TAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTAT 2693 ||| || | |||| || ||||||||| | ||| |||| ||||| || || | Sbjct 377345 ATGTAAAAC-GTTTAC----AACAAGGTATTGACAACCACACTGCAAACTCTATTCTGGT 377291 Query 2694 CAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGA 2753 ||||| ||||| ||||| |||| || ||||| | | || | || | | | | Sbjct 377290 TAAAGTAAACCAGATCGGATCTTTAACAGAAACCATCAATGCCGT--AACTTTAGCACAA 377233 Query 2754 AGC--TGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATC 2811 ||| ||| || || | || | ||| | ||||| || |||||| | || || Sbjct 377232 AGCAATGGTTATACCTCGGTCATGAGCCACAGAAGTGGTGAGACCGAAGATACCACGATT 377173 Query 2812 GCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACT 2871 ||||| |||| || || ||| || || || || || ||||| || || || Sbjct 377172 GCTGACCTTGCCGTGGCCCTGAACTGCGGACAGATCAAAACCGGTTCTGCTTCCCGCTCT 377113 Query 2872 GACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTG 2923 ||| | || || ||||||||||| |||||||| || ||||| |||| |||| Sbjct 377112 GACAGGATCGCAAAATACAACCAGTTGCTTCGCATTGAAGAAGAACTGGGTG 377061 >seq164 Length=35453 Score = 217 bits (240), Expect = 5e-52 Identities = 299/418 (72%), Gaps = 0/418 (0%) Strand=Plus/Minus Query 2495 ACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACG 2554 ||| ||| ||||| || || | ||||| ||| || | |||||||||||| |||||| Sbjct 10638 ACTTCCTGGAAGAGCTGACCAAACAGTACCCGATCGTCTCCATCGAAGATGGTCTGGACG 10579 Query 2555 AAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGG 2614 || |||||||| |||| | | ||| || || || | ||| | || ||| Sbjct 10578 AATCTGACTGGGAAGGTTTCGCTTACCAGACTAAAGTACTGGGCGACAAAATCCAGCTGG 10519 Query 2615 TTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACG 2674 ||||||||||| | |||||||| ||||| ||| || |||| || | | || | Sbjct 10518 TTGGTGACGACCTGTTCGTAACCAACACCAAGATCCTGAAAGAAGGCATCGAAAAAGGCA 10459 Query 2675 CTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACG 2734 |||||||| ||||| ||||| | ||||| |||||| || |||| |||||| | | | Sbjct 10458 TCGCTAACTCCATCCTGATCAAGTTCAACCAGATCGGTTCTCTGACCGAAACTCTGGCTG 10399 Query 2735 CTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAA 2794 ||||| | ||||||||||| ||||| ||||| || || | || |||||||| || |||| Sbjct 10398 CTATCAAGATGGCGAAAGACGCTGGCTACACCGCTGTTATCTCTCACCGTTCTGGCGAAA 10339 Query 2795 CTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAG 2854 ||||||| | || || || || | || |||| || || || || || || || | Sbjct 10338 CTGAAGACGCTACCATTGCCGACCTGGCTGTTGGTACCGCTGCAGGCCAGATCAAAACTG 10279 Query 2855 GTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 |||| || ||| ||||||| |||||||||||||||| || ||||||||||||| Sbjct 10278 GTTCTATGAGCCGTTCTGACCGCGTTGCTAAATACAACCAGCTGATTCGTATCGAAGA 10221 >seq102 Length=326246 Score = 114 bits (126), Expect = 4e-21 Identities = 261/390 (67%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| ||||||| |||||||| || ||| |||| | |||||||| || ||||||| Sbjct 201626 TACCCGATCATCAGCATCGAAGACGGCATGTCCGAAGATGACTGGGAAGGCTGGAAATAC 201567 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | | || | || || | || || ||||| | ||||| || || Sbjct 201566 CTGACCGATCTGATCGGCGACAAGTGCCAGCTCGTCGGCGACGATCTGTTCGTCACCAAT 201507 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACA-CGCTGCTAACTCAATCCTTATCAAAGT 2699 | ||| || | || || ||| || || || || || || |||| || Sbjct 201506 TCGGCTCGTCTGCGCGACGGCATCA-AGATGGGCGTGGCCAATTCCATTCTCGTCAAGGT 201448 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || ||| | |||||||||||||| |||| | |||| | ||||| Sbjct 201447 CAACCAGATCGGCACGTTGTCGGAAACTTTTGACGCGGTCGATACGGCGCACCGCGCTGG 201388 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 || || || || | || ||||| || |||||||| ||||| || || || || ||| | Sbjct 201387 CTATACGGCCGTCATGTCGCACCGCTCCGGTGAAACCGAAGACTCGACGATTGCCGATCT 201328 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || || || || || || || ||||| || || | || || | ||||| | Sbjct 201327 CGCCGTCGCCACCAATTGCGGACAGATCAAGACCGGCTCGCTTTCCCGCTCCGACCGGGT 201268 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGA 2909 || || |||||||| | | |||||||| Sbjct 201267 CGCCAAGTACAACCAGCTCATCCGTATCGA 201238 Score = 114 bits (126), Expect = 4e-21 Identities = 201/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 1948 ATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGT 2007 ||||||| ||| || || || || ||||| | ||||| |||||||| ||||| || Sbjct 202181 ATGATCGATCTCGATGGCACGCCGAACAAGAGCCGTCTTGGCGCCAACGCCATTCTCGGC 202122 Query 2008 GTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTAC 2067 || || |||| || || || || ||||| | | | | || || ||| |||| Sbjct 202121 GTATCGCTCGCCGTTGCCAAGGCCGCCGCTGAATCCTCCGGCCTGCCGCTCTACCGCTAT 202062 Query 2068 CTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGT 2127 || |||||| ||| | | || || || || |||||||||||||||||||| || Sbjct 202061 CTCGGCGGACCGAACGCCCATGTCCTGCCGGTGCCGATGATGAACATCATCAACGGCGGC 202002 Query 2128 TCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCA 2187 | || | ||| ||| |||| ||| || ||||| |||||| | || | ||| ||| | Sbjct 202001 GCGCATGCCGACAATCCCATCGATTTTCAGGAATTCATGATTCTCCCGGTTGGCGCATCG 201942 Query 2188 ACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAA 2240 || | ||||| | |||| ||||| ||| | |||||| |||| ||||| Sbjct 201941 TCACTGGCCGAAGCCGTGCGTTACGGTGCGGAAGTGTTCCACACGCTGAAGAA 201889 >seq15666 Length=2289 Score = 95.1 bits (104), Expect = 4e-15 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 2776 TCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAAC 2835 || ||||| || || ||||| |||||||| || || || ||| | ||||| | || Sbjct 2282 TCGCACCGCTCCGGCGAAACCGAAGATTCCACCATTGCCGATCTGGCAGTGGGCACCGCA 2223 Query 2836 GCTGGTCAAATTAAGACAGGTTCATTGTCA--CGTACTGACCGTATTGCTAAATACAACC 2893 || ||||| || ||||| ||||| | || ||| | ||||| || || || ||||||| Sbjct 2222 GCGGGTCAGATCAAGACCGGTTCG--GCCAGCCGTTCGGACCGCATCGCCAAGTACAACC 2165 Query 2894 AATTGCTTCGTATCGAAGACCAACTTGG 2921 ||||||| ||||||||||| ||||| || Sbjct 2164 AATTGCTGCGTATCGAAGAGCAACTGGG 2137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155986096610988