Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq27611 277 5e-70 seq13526 233 5e-57 seq19644 206 7e-49 >seq27611 Length=366 Score = 277 bits (306), Expect = 5e-70 Identities = 161/166 (97%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 10094 GCGAAGGCGGTCAGGTCAGGGCGGCCGAAGCCGGCCGGCGGGGTAGCGTCGGACACGTCG 10153 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 15 GCGAAGGCGGTCAGGTCAGGGCGGCCAAAGCCGGCCGGCGGGGTAGCGTCGGTCACGTCG 74 Query 10154 AGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTG 10213 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 75 AGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGATCTCGACGTCTATCTG 134 Query 10214 CGGACCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10259 ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 135 CGGACCGACGCGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 180 Score = 170 bits (188), Expect = 5e-38 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 10280 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGA 10339 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 79 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGATCTCGACGTCTATCTGCGGA 138 Query 10340 CCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10381 ||||||||||||||||||||||||||||||||| ||||| || Sbjct 139 CCGACGCGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 180 >seq13526 Length=412 Score = 233 bits (258), Expect = 5e-57 Identities = 135/139 (97%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10121 AAGCCGGCCGGCGGGGTAGCGTCGGACACGTCGAGGTCTTTCGGATGGATGGCGTAGGAA 10180 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 AAGCCGGCCGGCGGGGTAGCGTCGGTCACGTCGAGGTCTTTCGGATGGATGGCGTAGGAA 60 Query 10181 CCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGACCGACGCGCCCGGCCGACCTACA 10240 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 CCTCCATCGTCGGGAGACCTCGACGTCTACCTGCGGACCGACGCGCCCGGCCGACCTACA 120 Query 10241 CCCTCATCTGAGAAGACCC 10259 |||||||||| ||||| || Sbjct 121 CCCTCATCTGGGAAGAGCC 139 Score = 170 bits (188), Expect = 5e-38 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 10280 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGA 10339 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 38 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTACCTGCGGA 97 Query 10340 CCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10381 ||||||||||||||||||||||||||||||||| ||||| || Sbjct 98 CCGACGCGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 139 >seq19644 Length=1527 Score = 206 bits (228), Expect = 7e-49 Identities = 265/359 (74%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 36426 GCGAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATAC-C 36484 |||||||| |||||| | ||||| |||||||| ||||||||||| ||||| || || | Sbjct 1203 GCGAAACCGTCATCACCGTGGTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGC 1144 Query 36485 AATTCGGGCATTGCCG-TCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCG 36543 | ||||| ||||| | || ||||||||| ||||||| || || || | |||||||| Sbjct 1143 AGAACGGGC--TGCCGGTGGCGAACTTCACCATCGCATCGACGCCTCGGAACTTCGACCG 1086 Query 36544 GCAAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGC-TCGGTGTGGCGTC 36602 || || || |||||||||||||| || |||||||| || ||| || || ||||| Sbjct 1085 TGCCGCGAATGAGTGGAAGGACGGCGATGCGCTGTTCCT-CCGTGCATCCGTCTGGCGCG 1027 Query 36603 AGCCGGCCGAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGAC 36662 || |||||| ||||||| | ||| || | ||||||||||| || |||| ||||| | Sbjct 1026 AGTTCGCCGAGCACGTGGCGGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGCAGGGCC 967 Query 36663 GTCTCCGGGCGCGCAGCTACGACGACCGCGACGGAAACCGTCGCACTGTGATCGGGATCG 36722 |||| || |||| |||| | |||||||| || |||| ||||| | ||||| | | | Sbjct 966 GTCTGCGTCAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGG 907 Query 36723 AAGTCGATGACGTGGGCCCGGCGTTGAAGTTTGCCACCGCTACCGTCACCCGCGCCGCC 36781 | ||||| || | ||||| || | || || ||||| |||||||| || ||| Sbjct 906 AGGTCGACGAGATCGGCCCCTCGCTCCGGTACGCGACCGCGCAGGTCACCCGTGCGGCC 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126683921865148