Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq2100 176 7e-39 seq345 140 5e-28 seq3094 107 3e-18 seq12 104 4e-17 seq7636 95.1 2e-14 seq4256 87.8 3e-12 seq2048 87.8 3e-12 seq1660 87.8 3e-12 >seq2100 Length=19628 Score = 176 bits (194), Expect = 7e-39 Identities = 220/299 (74%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGC-TG 196124 |||| | ||||||| || | | ||| | ||||||| ||| ||| |||| || Sbjct 19068 CATGAAACAGTATCTTGATTTGATGCAGAAAGTGCTCACCGAGGGC-ACGCCAAAAAATG 19126 Query 196125 ACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAG 196184 |||| |||||||| ||||| | ||| | ||||| |||||||| || | ||||| | Sbjct 19127 ACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAACCTGCAGG 19186 Query 196185 ACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGC 196244 | || ||||||||||| ||||| ||| ||| | || |||||||| |||||||||| Sbjct 19187 AAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCATGAACTGC 19246 Query 196245 TGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCT 196304 |||||||||| | || |||||||||||| || ||| | || ||| ||| | |||| Sbjct 19247 TGTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGTCACCATCT 19306 Query 196305 GGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCGT 196363 || ||||||||||| | || || ||||||||||||| ||||| || ||||||||| Sbjct 19307 GGGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTACGGCAAACAGTGGCGT 19365 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 196524 ACCAGCTGCGCAACGATCCTGATAACCGCCGTATCATTGTATCGGCCTGGAACGTCGGCG 196583 |||||||| ||||| || || |||||| ||||| || ||||| ||||||||||||| Sbjct 19418 ACCAGCTGAAAAACGACCCGGACTCCCGCCGGATCATCGTCTCGGCATGGAACGTCGGCG 19477 Query 196584 AGCTAGACGATATGGCGTTAGCTCCATGCCATGCTTTCTTCCAGTTTTAC 196633 |||| || | |||||| | || || ||||| || ||||||||||| ||| Sbjct 19478 AGCTGGATAAAATGGCGCTGGCGCCGTGCCACGCCTTCTTCCAGTTCTAC 19527 >seq345 Length=175672 Score = 140 bits (154), Expect = 5e-28 Identities = 200/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 196086 TCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA 196145 |||| ||||| |||||| || |||| |||| | ||||||||||| |||||||| | Sbjct 150368 TCTT-CAGCATGTGCTCGATACCGGCGTCGACCGCGGCGACCGTACCGGGACAGGCAC-A 150425 Query 196146 CGT-CCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACC 196204 ||| || | ||||| |||||||| ||||||||| | || || || | || Sbjct 150426 CGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACG 150485 Query 196205 ACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGAC 196264 || |||||||| ||||| |||||||| || || |||||||||||||| || || || Sbjct 150486 ACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAA 150545 Query 196265 ACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAA 196324 || |||||| || || || || ||||| || | |||||| | || ||||| |||| Sbjct 150546 ACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAG 150605 Query 196325 CTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| | || |||||||| || || | |||||||| Sbjct 150606 AACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 150643 >seq3094 Length=9505 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 196980 CGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTATCTTCGATTACAAATTCGAAG 197039 || |||||| |||||| ||||||||||| |||| || ||||| ||| || |||| Sbjct 9426 CGCTGCCGAAGCTGGTCATCAAACGCAAGCCGGCGTCGATTTTCGACTACCGCTTTGAAG 9367 Query 197040 ACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAAAGCCCCGGTGGCTATTTAA 197098 ||||||| | | ||| |||||||||||||||| |||||||| |||||||| |||||| Sbjct 9366 ACTTCGAGATTGAAGGTTACGATCCGCATCCGGGCATTAAAGCGCCGGTGGCGATTTAA 9308 >seq12 Length=339259 Score = 104 bits (114), Expect = 4e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 196163 CAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTG 196222 |||||| | ||| | || || || || || || ||||||||||| || ||||| ||| | Sbjct 190711 CAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTA 190770 Query 196223 CGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTG 196282 ||||| || || |||||| | ||||| | | ||||||||||| || |||||| Sbjct 190771 AAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTG 190830 Query 196283 AATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCG 196342 || | ||| ||| |||||| | |||||||| | ||| |||| ||||||| || Sbjct 190831 AAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCT 190890 Query 196343 GTTTACGGTAAGCAGTGGCGTGAATGG 196369 ||||| || || |||||| |||| Sbjct 190891 GTTTATGGATCACAATGGCGTTCATGG 190917 >seq7636 Length=2863 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 ||||| ||||||||| | ||||| ||||| || || | |||| ||||| || Sbjct 2190 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTG 2131 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 | ||| | | | || ||||||||||||||| ||||| || || || || |||| Sbjct 2130 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATC 2071 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360 ||| |||| ||||| | |||| ||| ||||||| ||||| ||||| |||||||| Sbjct 2070 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 2014 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 196808 GATATGTTCCTCGGTGTACCGTTCAACATCGCGTCTTACGCATTGCTGATTCACATGGTG 196867 ||| | |||||||| | |||| ||||| ||| | || ||||| | || ||| || Sbjct 1764 GATGTATTCCTCGGCCTGCCGTACAACACCGCTGCCCTGGCGTTGCTCACCCATATGCTG 1705 Query 196868 GCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTTTGGACTGGCGGTGACGTCCACATC 196927 || || ||| || || | || |||| || | || || ||| |||| | Sbjct 1704 GCCCAGCAGTGCGACCTGATCCCTCACGAGATCATCGTCACCACGGGCGACACCCACGCC 1645 Query 196928 TACTCCAATCACATGGAACAGGTAGAAGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCG 196987 ||| ||| |||||||||||| | | |||||| | || | ||||| | ||||| Sbjct 1644 TACAGCAACCACATGGAACAGATCCAGACCCAGCTGGCGCGCACGCCGAAGAAGCTGCCG 1585 Query 196988 ACGCTGGTTATCAAACGCAAACCGGACAGTATCTTCGATTACAAATTCGAAGACTTCGAA 197047 ||||| ||||| |||||||| | |||| |||||||||||||||||| || ||| Sbjct 1584 GAACTGGTGATCAAGCGCAAACCCGCGTCGATCTACGATTACAAATTCGAAGATTTTGAA 1525 Query 197048 CTGGTAGGCTACGA 197061 | || ||||| || Sbjct 1524 ATCGTGGGCTATGA 1511 >seq4256 Length=25676 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 10069 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 10010 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 10009 CAGAGGAGCCAAATTT 9994 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 11837 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 11896 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 11897 CAGAGGAGCCAAATTT 11912 >seq2048 Length=13079 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 4083 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 4024 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 4023 CAGAGGAGCCAAATTT 4008 >seq1660 Length=19358 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| ||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 78 GTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 137 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 138 CCGTTCCGCCA 148 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| ||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 9531 GTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 9590 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 9591 CCGTTCCGCCA 9601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771270170908440