Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq360 174 5e-39 seq4 174 5e-39 seq97 102 2e-17 seq11225 100 8e-17 seq4750 96.9 1e-15 seq76 93.3 1e-14 >seq360 Length=29890 Score = 174 bits (192), Expect = 5e-39 Identities = 213/291 (73%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 33624 TTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAACTGACC 33683 ||| ||||||||||| || || | | ||| ||||| || | || |||| ||| || Sbjct 27281 TTCGGTGGTGTATTTGTCCTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCC 27340 Query 33684 TTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCC 33743 ||||| || || || |||||||| | |||||||||||||| | ||| || || ||||| Sbjct 27341 TTCAATGTACACCTGAGAGCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCC 27400 Query 33744 AAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATT 33803 || | || ||||||||||| || || ||||| || | || || || ||| ||| Sbjct 27401 GAACAGCACAACGCGGTGCCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACG 27460 Query 33804 CCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCG 33863 ||| ||||| || || || | | | |||||| |||||||||||| |||||||||| || Sbjct 27461 CCAGGATTCGGAAGTTGCCAGCGTGAAGTTGGCGACAGCGCCGCCACTTGGCATGTAGCG 27520 Query 33864 CACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCC 33914 ||||| |||||||| || | | |||| || || || || |||||||| Sbjct 27521 TACTTCCGGGTCCTGCCCCAGATTACCGACGAGAATCACCTTGTTTACGCC 27571 >seq4 Length=38681 Score = 174 bits (192), Expect = 5e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 7096 GATGCACAGCAAAGGGTTGATGCTGCGCGCAATGACGCTGTCAATGCTGCTGCTAAGTCT 7155 || || ||||| ||| | || ||||||||||| ||| | ||||||| ||| || Sbjct 4724 GAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGCT 4665 Query 7156 GGCAGGTTGCAGCAACAGCTCGCAAATATCCGCAAGCAGCTC-GTCGGATATTCCACCAC 7214 ||| |||||||||||||||||| ||||| |||||||| | | | ||| | |||| Sbjct 4664 GGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCAC 4606 Query 7215 TGAGTCCATTGGCAATCCAGCCGCAGAAACCGGAGTTTTGCTTGGAGACGTGCTCAGCAA 7274 | || ||| |||||||||| |||||||||||||||| |||||||||||||| Sbjct 4605 TATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCAA 4546 Query 7275 ATCTGTCGAAAGAAATCGACAGCTGGCAGATTACGCTGACAGGGCAAGAGAAGCAGGATT 7334 |||| |||| |||| ||||| |||||||| ||||||||| |||| ||||| ||| Sbjct 4545 ATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGACG 4486 Query 7335 AGCGTGTGAGGCGCAGTACAATTCGCTG 7362 || ||||| ||||||| |||||||| Sbjct 4485 AGTCTGTGAAAAGCAGTACGATTCGCTG 4458 >seq97 Length=44549 Score = 102 bits (112), Expect = 2e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 33670 GTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATT 33729 ||||| | ||||||||| | || || || | ||| || | ||||| || ||||| | | Sbjct 4960 GTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACT 4901 Query 33730 TCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCA 33789 || ||||||||||| || | || ||||| |||||||| || |||||| |||| || Sbjct 4900 TCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCT 4841 Query 33790 GTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCA 33849 || || ||| ||| | |||||| || || || | ||| || || ||||| || Sbjct 4840 GTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTGCGCCCCCG 4781 Query 33850 TTTGGCATGTATCGCACTTCTGGGTC 33875 || || ||||| || ||||| || || Sbjct 4780 TTGGGGATGTAACGGACTTCCGGATC 4755 >seq11225 Length=5908 Score = 100 bits (110), Expect = 8e-17 Identities = 159/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 33703 CCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGC 33762 ||||| | ||||||||||| || ||||| |||| |||||| |||| |||||||||||| Sbjct 5101 CCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGC 5160 Query 33763 CATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGATTCCGAT-GTAGC 33821 || || || |||||| | || || || |||||| ||||| | || || | || || Sbjct 5161 CACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCA-GCTTTCGCTGGTGGC 5219 Query 33822 AACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCC 33881 | | || ||| | || ||| ||| || || |||| || ||||| ||||| ||| Sbjct 5220 CAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCGCC 5279 Query 33882 TAATGTGCCGAGGATGATTACTTTATTTACGCCGCGAGTTGCCAT 33926 |||||| || || ||||| || ||||| || |||||| Sbjct 5280 GGCGTTGCCGACGAGAATCACTTTGTTGACGCCTCG---TGCCAT 5321 >seq4750 Length=4641 Score = 96.9 bits (106), Expect = 1e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 33678 CTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAG 33737 || |||||| | || || || || ||||||| |||||||||||||| |||||||||| Sbjct 4222 CTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGAC 4163 Query 33738 CTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTT 33797 || ||||| | | || ||||||||||| || | || ||||| || || ||| Sbjct 4162 TTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTT 4103 Query 33798 ATCATTCCATGATTCCGATGTAGCAA--CAGATACGTTGGCAACAGCGCCGCCATTTGGC 33855 ||| |||| || ||| |||| | || | |||| || || || || || Sbjct 4102 GTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGA--TTGGTTACTGCATTACCGTTCGGT 4045 Query 33856 ATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCG 33915 | ||| || |||||| || || || | ||||| | | ||| ||||||||||||||| Sbjct 4044 AAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGATCACTTTATTTACGCCG 3985 Query 33916 CGAG 33919 |||| Sbjct 3984 CGAG 3981 >seq76 Length=48202 Score = 93.3 bits (102), Expect = 1e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 33691 TAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATA 33750 || || || | ||| || | ||||| |||||||| | ||| ||||||||||| || | Sbjct 1559 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 1500 Query 33751 ACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGAT 33810 || |||||||||||||| || |||||| |||| || || || ||| ||| | Sbjct 1499 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 1440 Query 33811 TCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCT 33870 || ||||| || || | ||| || || ||||| || || || ||||| || ||||| Sbjct 1439 TCTGATGTGGCCACCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCC 1380 Query 33871 GGGTCCTGGCC 33881 || || | ||| Sbjct 1379 GGATCATTGCC 1369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144924205751696