Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq3843 120 4e-22 seq103 104 3e-17 seq19411 86.0 9e-12 >seq3843 Length=4024 Score = 120 bits (132), Expect = 4e-22 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 162724 CTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATG 162783 || || ||| | |||||| ||||| ||||| |||||||| |||||||| ||||| ||| Sbjct 3520 CTCGGTAACTTGAATGCCAAGCGTGATTGGGGTCACGCCAAGGACTACGTCGAGGCAATG 3579 Query 162784 TGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 ||||||||||| ||||||||||||||||| || | ||| || || ||||||||| Sbjct 3580 TGGTTGATGCTCCAGCAAGAGAAGCCAGACGACTTTGTCATTGCTACTGGTGAG 3633 >seq103 Length=5517 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 2102 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 2161 Query 142852 TCCGTTATTCTCCACCA 142868 ||||||||||||||||| Sbjct 2162 TCCGTTATTCTCCACCA 2178 >seq19411 Length=388 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 39 CGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAA 98 Query 142852 TCCGTTATTCTCCAC 142866 || || |||||| Sbjct 99 TCTCCTAGGCTCCAC 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691215227264520