Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq4332 161 5e-35 seq40 87.8 9e-13 >seq4332 Length=4020 Score = 161 bits (178), Expect = 5e-35 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 46689 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 46748 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 3605 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 3546 Query 46749 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 46806 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 3545 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 3488 Query 46807 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 46866 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 3487 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 3428 Query 46867 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 46926 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 3427 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 3369 Query 46927 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTTG 46985 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 3368 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 3309 Query 46986 AGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 47045 |||| || | | ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 3308 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 3249 Query 47046 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 47089 | | || ||||| || |||| |||||||||||| |||||||| Sbjct 3248 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTAC 3205 Score = 161 bits (178), Expect = 5e-35 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 7100 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 7159 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 3605 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 3546 Query 7160 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 7217 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 3545 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 3488 Query 7218 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 7277 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 3487 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 3428 Query 7278 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 7337 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 3427 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 3369 Query 7338 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTTG 7396 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 3368 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 3309 Query 7397 AGCGTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 7456 |||| || | | ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 3308 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 3249 Query 7457 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 7500 | | || ||||| || |||| |||||||||||| |||||||| Sbjct 3248 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTAC 3205 >seq40 Length=14228 Score = 87.8 bits (96), Expect = 9e-13 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 65760 GTAGTTAGTGTTATCAGATATCACCAATAATTTATCGGGGATCATCTGCAGCCTTTTTAC 65819 |||| | |||||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 8546 GTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTAC 8605 Query 65820 GTATATTTTATCATCAAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGATGCT 65879 | | | || || | ||| ||||||| |||||||| ||||| || | | Sbjct 8606 ATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGT 8665 Query 65880 TATATCGACAAAAATAAGATCTCCCGGTTCAATTGTTGGCGCCATGCTGTCACCGCGCAC 65939 ||||| || || | ||||| || ||||| || ||| | |||||||||||||||||| Sbjct 8666 GATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCAC 8725 Query 65940 GTTAAT 65945 |||||| Sbjct 8726 GTTAAT 8731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247390064432392