Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1227 107 8e-18 seq720 93.3 2e-13 seq946 84.2 9e-11 seq373 84.2 9e-11 >seq1227 Length=12999 Score = 107 bits (118), Expect = 8e-18 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 121726 CAAGGAGGACACCTTCCTCGCGTCGGCCAACCTGTGCCGATGGATCCTCAACTACGACGA 121785 |||||| || |||||||| | |||||||| || || |||||| |||||| | | Sbjct 2592 CAAGGAAGATGCCTTCCTCACCAGCGCCAACCTCTGTCGTTGGATCATCAACTTTAAGCA 2651 Query 121786 CATCAAGATGGGCCGCGAGCTCGGCCAGGGCTCTTACGGCGTCGTCAGCGAGGGCAAGTG 121845 | || | |||| | |||| ||| || ||| ||||| | ||| || || Sbjct 2652 GCTGCAGCTCGGCCCTCAAATCGGTGTTGGCAGCTATGGCATCGTCTACAAGGCGAAATG 2711 Query 121846 GAAGGGGGTGGGCGTCGCCGTCAAGCGCTTCATCAAGCAGAAACTGGACGAGAAGCGCGT 121905 ||| || |||| ||| ||||| ||| |||||||||||||| || |||||| || | Sbjct 2712 GAAAGGAGTGGACGTTGCCGTAAAGAAGTTCATCAAGCAGAAGCTCTCCGAGAAACGAAT 2771 Query 121906 CCTGGAGTTCCGCGCCGAGATGGCCATCCTCGCCGAGCTCAGGCACCCCAACGTCGTGCT 121965 ||||||||||| || || ||||| ||||| |||||| ||||||||| | || || Sbjct 2772 GCTGGAGTTCCGTGCTGAAATGGCTTTCCTCAGCGAGCTTCACCACCCCAACATTGTTCT 2831 Query 121966 CTTCTTTGG 121974 || |||| Sbjct 2832 GTTTATTGG 2840 >seq720 Length=140915 Score = 93.3 bits (102), Expect = 2e-13 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 121726 CAAGGAGGACACCTTCCTCGCGTCGGCCAACCTGTGCCGATGGATCCTCAACTACGACGA 121785 |||||| || |||||||| | |||||||| || || |||||| |||||| | | Sbjct 103264 CAAGGAAGATGCCTTCCTCACCAGCGCCAACCTCTGTCGTTGGATCATCAACTTTAAGCA 103205 Query 121786 CATCAAGATGGGCCGCGAGCTCGGCCAGGGCTCTTACGGCGTCGTCAGCGAGGGCAAGTG 121845 | || | |||| | |||| ||| || ||| ||||| | ||| || || Sbjct 103204 GCTACAGCTCGGCCCTCAAATCGGTGTTGGCAGCTATGGCATCGTCTACAAGGCGAAATG 103145 Query 121846 GAAGGGGGTGGGCGTCGCCGTCAAGCGCTTCATCAAGCAGAAACTGGACGAGAAGCGCGT 121905 ||| || |||| ||| ||||| ||| |||||||||||||| || |||||| || | Sbjct 103144 GAAAGGAGTGGACGTTGCCGTAAAGAAGTTCATCAAGCAGAAGCTCTCCGAGAAACGAAT 103085 Query 121906 CCTGGAGTTCCGCGCCGAGATGGCCATCCTCGCCGAGCTCAGGCACCCCAACGTCGTGCT 121965 |||||||||| || || ||||| |||| |||||| || |||||| | || || Sbjct 103084 GTTGGAGTTCCGTGCTGAAATGGCTTTCCTTAGCGAGCTTCACCATCCCAACATTGTTCT 103025 Query 121966 CTTCTTTGG 121974 || |||| Sbjct 103024 GTTTATTGG 103016 >seq946 Length=314241 Score = 84.2 bits (92), Expect = 9e-11 Identities = 125/178 (70%), Gaps = 16/178 (9%) Strand=Plus/Plus Query 258190 CGGCTGTCCTTGGGATGCCAAGGTCTGCGCCTACGCGGCGCAAAACAACGACCTGGAGAT 258249 ||| ||||||||||| | | ||||||| || || | || | ||||||||| Sbjct 255852 CGGATGTCCTTGGGACGAGACTACTTGCGCCTTTGCTGCCCGGAAAGGCCACCTGGAGAC 255911 Query 258250 GCTGCAATGGGCTCGTAGTGAGAA---ATGTCCCTGGGACGTGTGGACATGCATCAACGC 258306 |||||||||||| || | ||| |||||| ||||||| | |||| |||||| | || Sbjct 255912 GCTGCAATGGGC---CAGAGCGAACGGATGTCCTTGGGACGAGAGGACCTGCATCGATGC 255968 Query 258307 TGCCAGCAGGGGACACCTCGAGTTGCTCCAATGGGCCATAGCCAACGGCTGTCCCTGG 258364 |||||| | ||| | ||| |||||||||| ||| ||||| ||||| ||| Sbjct 255969 TGCCAGGAAGGGCC----------GCTGCAATGGGCCAGAGCGAACGGATGTCCTTGG 256016 >seq373 Length=14099 Score = 84.2 bits (92), Expect = 9e-11 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 258190 CGGCTGTCCTTGGGATGCCAAGGTCTGCGCCTACGCGGCGCAAAACAACGACCTGGAGAT 258249 ||| ||||||||||| | | | |||||| || || | || | | ||||||| Sbjct 2562 CGGATGTCCTTGGGACGAGACGACTTGCGCCGTTGCTGCCCGGAATGGCCATCTGGAGAC 2503 Query 258250 GCTGCAATGGGCTCGTAGTGAGAA---ATGTCCCTGGGACGTGTGGACATGCATCAACGC 258306 |||||||||||| || | || ||||| ||||||| | |||| |||| | | || Sbjct 2502 GCTGCAATGGGC---CAGAGCAAACGGTTGTCCTTGGGACGAGAGGACCTGCACCGATGC 2446 Query 258307 TGCCAGCAGGGGACACCTCGAGTTGCTCCAATGGGCCATAGCCAACGGCTGTCCCTGGAA 258366 ||| || | ||| || || ||| ||| || ||||||| ||||||||| ||||| ||| | Sbjct 2445 TGCAAGGAAGGGCCATCTGGAGACGCTGCAGTGGGCCAGAGCCAACGGATGTCCTTGGGA 2386 Query 258367 C 258367 | Sbjct 2385 C 2385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084695283665790