Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2381 95.1 5e-14 seq14518 89.7 2e-12 >seq2381 Length=1917 Score = 95.1 bits (104), Expect = 5e-14 Identities = 130/178 (73%), Gaps = 8/178 (4%) Strand=Plus/Minus Query 258194 TGTCCTTGGGATGCCAAGGTCTGCGCCTACGCGGCGCAAAACA-ACGACCTGGAGATGCT 258252 |||||||||||||| | | ||||||| || || || || | | |||| | | | Sbjct 208 TGTCCTTGGGATGCGAGGACTTGCGCCTTAGCTGC-TAAGGCAGGCCATTTGGAAACGTT 150 Query 258253 GCAATGGGCTCGTAGTGAGAA---ATGTCCCTGGGACGTGTGGACATGCATCAACGCTGC 258309 ||||||||| || | || |||||| ||||||| |||||| |||| ||||||||| Sbjct 149 GCAATGGGC---CAGAGCAAACGGATGTCCTTGGGACGAGTGGACCTGCACCAACGCTGC 93 Query 258310 CAGCAGGGGACACCTCGAGTTGCTCCAATGGGCCATAGCCAACGGCTGTCCCTGGAAC 258367 | || || ||| | || ||||| |||||||||| ||| ||||| ||||| ||| || Sbjct 92 TGGGAGAGGGCACTTGGAATTGCTGCAATGGGCCAGAGCAAACGGATGTCCATGGGAC 35 >seq14518 Length=52235 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 258190 CGGCTGTCCTTGGGATGCCAAGGTCTGCGCCTACGCGGCGCAAAACAACGACCTGGAGAT 258249 ||| ||||||||||| | | | ||||||| || || | || | | ||||||| Sbjct 46344 CGGATGTCCTTGGGACGAGACGACTTGCGCCTTTGCTGCCCGGAAAGGCCATCTGGAGAC 46403 Query 258250 GCTGCAATGGGCTCGTAGTGAGAA---ATGTCCCTGGGACGTGTGGACATGCATCAACGC 258306 |||||||||||| || | || ||||| ||||||| | |||| |||| | | || Sbjct 46404 GCTGCAATGGGC---CAGAGCAAATGGTTGTCCTTGGGACGAGAGGACCTGCACCGATGC 46460 Query 258307 TGCCAGCAGGGGACACCTCGAGTTGCTCCAATGGGCCATAGCCAACGGCTGTCCCTGGA 258365 ||| || | ||| || || ||| ||| |||||||||| ||| ||||| ||||| |||| Sbjct 46461 TGCAAGGAAGGGCCATCTGGAGACGCTGCAATGGGCCAGAGCAAACGGATGTCCTTGGA 46519 Score = 84.2 bits (92), Expect = 9e-11 Identities = 125/178 (70%), Gaps = 16/178 (9%) Strand=Plus/Plus Query 258190 CGGCTGTCCTTGGGATGCCAAGGTCTGCGCCTACGCGGCGCAAAACAACGACCTGGAGAT 258249 ||| ||||||||||| | | ||||||| || || | || | ||||||||| Sbjct 45327 CGGATGTCCTTGGGACGAGACTACTTGCGCCTTTGCTGCCCGGAAAGGCCACCTGGAGAC 45386 Query 258250 GCTGCAATGGGCTCGTAGTGAGAA---ATGTCCCTGGGACGTGTGGACATGCATCAACGC 258306 |||||||||||| || | ||| |||||| ||||||| | |||| |||||| | || Sbjct 45387 GCTGCAATGGGC---CAGAGCGAACGGATGTCCTTGGGACGAGAGGACCTGCATCGATGC 45443 Query 258307 TGCCAGCAGGGGACACCTCGAGTTGCTCCAATGGGCCATAGCCAACGGCTGTCCCTGG 258364 |||||| | ||| | ||| |||||||||| ||| ||||| ||||| ||| Sbjct 45444 TGCCAGGAAGGGCC----------GCTGCAATGGGCCAGAGCGAACGGATGTCCTTGG 45491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084337002992802