Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq445 170 2e-40 seq446 140 3e-31 seq3138 98.7 9e-19 seq1328 89.7 5e-16 seq2288 86.0 6e-15 seq2213 75.2 1e-11 >seq445 Length=5314 Score = 170 bits (188), Expect = 2e-40 Identities = 142/173 (82%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||| Sbjct 2194 GGGGGATGCCTAGGCTCTCAGAGGCGATGAAAGGCGTGATAAGCTGCGAAAAGCTGCGGG 2253 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || |||||| || ||||||||| ||||| | ||||||||||||||| ||| ||| ||| Sbjct 2254 GACGGGCACACACCGATTGATCCGCAGATACCTGAATGGGGCAACCCGTTATGTTGAAGA 2313 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| || | || |||| | ||| ||| | ||||||||||||||||||| Sbjct 2314 CATAACACACCGATAGG---TGGGCAAACCCGCTGAACTGAAACATCTAAGTA 2363 >seq446 Length=116643 Score = 140 bits (154), Expect = 3e-31 Identities = 139/179 (78%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| || | |||||||| ||||||| ||||||| ||||||||||||||||||||| |||| Sbjct 2407 GCACACAGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGC 2466 Query 62 TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATAT 121 | |||||||| ||| ||| ||||| ||||| |||| ||||||||||| |||| | | Sbjct 2467 TCCGGGGATTAGCAAATATGAATTAATCCGGAGATTTCCGAATGGGGAAACCTGGCTAGT 2526 Query 122 TGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| || || | | | || || ||| || ||||||||||||||||||| Sbjct 2527 TGAAGACTAGTCGTA---CAAAG---TACGCAAACCTGCTGAACTGAAACATCTAAGTA 2579 >seq3138 Length=572 Score = 98.7 bits (108), Expect = 9e-19 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || ||||||||||| Sbjct 319 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 378 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| Sbjct 379 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 432 >seq1328 Length=80990 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| ||||||| |||| |||| Sbjct 1852 GGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCGTCGGG 1793 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || |||| |||||||| ||| ||||||||||| ||||| Sbjct 1792 GAGGTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 1746 >seq2288 Length=2140 Score = 86.0 bits (94), Expect = 6e-15 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||| Sbjct 334 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 393 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||| ||||| | | | |||||||| || ||||||||||| ||||| Sbjct 394 ATCGGGGAGCTGGCA-ACAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCC 446 >seq2213 Length=1110 Score = 75.2 bits (82), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGC-TCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 ||| ||||||||||||| ||| ||| |||| ||||||||||||| || |||||| ||| Sbjct 452 GCAAACGGTGGATGCCTTGGCATCT-GGAGCCGAAGAAGGACGTAGCAATCTGCGATAAG 510 Query 61 CTACGGGG-ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | ||||| | || | | | |||||||| | | ||||||||||| ||||| Sbjct 511 CCTCGGGGAACTGATAAGCAAGTTTTGATCCGAGGGTGTCCGAATGGGGAAACCC 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476738188542