Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017-
01-02] 13,382 sequences; 45,801,537 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq1838 441 2e-121
seq1328 306 8e-81
seq445 201 2e-49
seq446 172 1e-40
seq4 123 5e-26
seq8180 111 3e-22
seq2185 104 5e-20
>seq1838
Length=1451
Score = 441 bits (488), Expect = 2e-121
Identities = 301/336 (90%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| ||| ||||||| || ||||||||||||||| |||||
Sbjct 495 CTTTACAACCCGAAGGCCTTCTT-CACCCACGCGGTAT-GGCTGGATCAGGCTTGCGCCC 552
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 612
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| |
Sbjct 613 TGTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCG 672
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 673 CCAACTAGCTAATCCGACATCGGCTCATCTATCCGCGCAAGGCCCGAAGGTCCCCTGCTT 732
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
|| |||| ||| |||||||||||||||||| |||||| |||||||||||||| | ||
Sbjct 733 TCACCCGAAGGTCGTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGAAAAG 792
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
| ||||||| | | ||| |||||||||||||| |||
Sbjct 793 GTAGATTCCGATGTATTCCTCACCCGTCCGCCACTC 828
>seq1328
Length=80990
Score = 306 bits (338), Expect = 8e-81
Identities = 270/336 (80%), Gaps = 16/336 (5%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| |||||
Sbjct 3771 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 3828
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 3829 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 3888
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| ||
Sbjct 3889 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 3948
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||||| || |||||||| || || | | |||
Sbjct 3949 CCAACTAGCTAATCCAACGCGGGCTCATC--------CATCTCCGATAAAT------CTT 3994
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
||||||| ||||||||| |||||||||| ||||||| |||||| || | |
Sbjct 3995 TCTCCCGAAGGACGTATACGGTATTAGCACACGTTTCCATGCGTTATTCCGTAGAGATGG 4054
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
| ||||||| | || ||||||||||||| |||||||
Sbjct 4055 GTAGATTCCCACGCGTTACTCACCCGTCTGCCGCTC 4090
>seq445
Length=5314
Score = 201 bits (222), Expect = 2e-49
Identities = 173/210 (82%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAG-ACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||||| || ||| || | | |||||||||| |||||| |||||||| |||||
Sbjct 565 TTTACAATCCATAGGACCGTCATCCTG-CACGCGGCAT-GGCTGGTTCAGGCTTGCGCCC 508
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||| |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 507 ATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAG 448
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| |||| |||||||| | ||| ||||| |||||||| |||| |||||| |
Sbjct 447 TGTGGGGGATCTCCCTCTCAGGACCCCTACCCATCGTAGCCTTGGTAAGCCGTTACCTTA 388
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCT 210
||||||||||||| ||| | ||||||||
Sbjct 387 CCAACTAGCTAATGGGACGCATGCTCATCT 358
>seq446
Length=116643
Score = 172 bits (190), Expect = 1e-40
Identities = 138/165 (84%), Gaps = 1/165 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||| |||||| |||| || | |||||| |||||||||| |||||||||||
Sbjct 718 CACGCGGCAT-GGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTC 660
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| | ||||||||||||| | |
Sbjct 659 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCT 600
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
| ||||||||||||||| ||| ||||| | |||||||||||||
Sbjct 599 AGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAAT 555
>seq4
Length=33404
Score = 123 bits (136), Expect = 5e-26
Identities = 145/190 (76%), Gaps = 7/190 (4%)
Strand=Plus/Minus
Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77
|||||| | | |||| | |||| |||||||| |||||||| ||||||||||||||||||
Sbjct 14344 CTTCTTCCCC-CACGTGATATTG-CTGGATCAAGCTTTCGCTCATTGTCCAATATTCCCC 14287
Query 78 ACTGCTGCCTCCCGTA-GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136
||||||||||| || ||| ||| | | | ||| ||||| |||| |||||||||||
Sbjct 14286 ACTGCTGCCTC---TATCGAGGTTGGTCTTTCTTTCAATTCCAATGTGGCTGATCATCCT 14230
Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC-TAATCC 195
| ||||||| |||| ||| | | |||| | || ||||| ||||||| | |||| |
Sbjct 14229 CCCAGACCAACTACGAATCTTTGGCTTGTTTGGCTTTTACCCTTCCAACTACCTTAATTC 14170
Query 196 GACCTAGGCT 205
|| || |||
Sbjct 14169 GATATAAGCT 14160
>seq8180
Length=713
Score = 111 bits (122), Expect = 3e-22
Identities = 124/165 (75%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100
||||||||| |||| ||| |||||||||||||||| ||||| |||| | | |||| |
Sbjct 661 GCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCTTACTGCAGCCT--CTTCAGAGTTT 604
Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160
|| | | | ||| | ||| |||| ||||||| ||||| |||| |||| ||| |
Sbjct 603 GGTCGTTCTTTCAATACCAATGTGGATGATCATTCTCTCGAACCACCTACGAATCTCAGG 544
Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCT 205
||||| |||| ||||| |||||||| ||||| |||| || |||
Sbjct 543 TTTGGTAAGCCTTTACCCCACCAACTGCCTAATTCGACATACGCT 499
>seq2185
Length=1414
Score = 104 bits (114), Expect = 5e-20
Identities = 79/91 (87%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||||| |||||| || || | | | |||||||| ||| ||| ||||||||| ||||||
Sbjct 1326 TTTACAACCCGAAGGCCGTCGTCC-CTCACGCGGCGTTG-CTGCATCAGGCTTGCGCCCA 1383
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGT 92
|||| ||||||||||||||||||||||||||
Sbjct 1384 TTGTGCAATATTCCCCACTGCTGCCTCCCGT 1414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071856544960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |