Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq446 127 1e-27 seq445 114 9e-24 seq2403 111 1e-22 seq6402 84.2 2e-14 seq4 84.2 2e-14 seq5478 71.6 1e-10 >seq446 Length=116643 Score = 127 bits (140), Expect = 1e-27 Identities = 113/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 4833 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 4774 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| || ||| |||||||||||| Sbjct 4773 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCG 4714 Query 121 CACTAC-GATTTCCGACCG 138 || || |||||||||||| Sbjct 4713 -ACGACCGATTTCCGACCG 4696 >seq445 Length=5314 Score = 114 bits (126), Expect = 9e-24 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | |||||||||||||||| || Sbjct 4608 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATGCTCTA 4549 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| | ||| || | ||| |||| || |||||| | ||| |||||||||||| Sbjct 4548 CTTTCGTACCTGATCGACCTGTATGTCTCTCAGTCAAGCTCCCTTATGCCATTGCACT 4491 >seq2403 Length=443 Score = 111 bits (122), Expect = 1e-22 Identities = 113/142 (80%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | ||||||||||||||| || Sbjct 397 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGT 338 Query 61 CTTTCGCATCTGCTCTAGTTGT-TGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT- 118 |||||| |||||| |||| ||| ||| || ||||||| ||| ||| |||||||| Sbjct 337 CTTTCGACCCTGCTCGGCTTGTCTGC-CTCACAGTCAAGCAAGCTTATGCTATTGCACTC 279 Query 119 ATCACTACGATTTCCGACCGTA 140 ||| |||| || || | |||| Sbjct 278 CTCA-TACGGTTACCAAGCGTA 258 >seq6402 Length=269 Score = 84.2 bits (92), Expect = 2e-14 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || ||| ||||| || | | | |||||||||||| | Sbjct 266 TACCTTTTATCCGTT-AGCAATAGCCTTTCCACACAGAACTATTGGATCACTATGATCAA 208 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||| || |||| || | |||| | ||| || ||||||| |||| ||||||| |||| | Sbjct 207 CTTGCGTCTCTGATCGACTTGTAGGTCTTTCAGTCAAGCAAACTTATGCCATTACACTCT 148 Query 121 C 121 | Sbjct 147 C 147 >seq4 Length=33404 Score = 84.2 bits (92), Expect = 2e-14 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| |||| | || ||||| || ||||||||||||||||| Sbjct 22160 TACCTTTTATCCGTT-AGCGGTAACCTTTCCACACAGTATTACCGGATCACTATGACCGA 22102 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| |||| || | |||| ||| || ||||||| |||||||||||| Sbjct 22101 CTTTCGTCTCTGATCGATTTGTATATCTTTCAGTCAAGCAAACTTTTGCCATT 22049 >seq5478 Length=225 Score = 71.6 bits (78), Expect = 1e-10 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCA---CCGGATCACTATGAC 57 ||||||||||||||||||||| || |||||| || ||||| ||||||||||| | Sbjct 224 TACCTTTTATCCGTTGAGCGACAGCGCTTCCA--CA-AGCCACTGCCGGATCACTAGTCC 168 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | ||| |||| || |||||| | ||| ||| || ||| Sbjct 167 CGACTTTCGTCCCTGCTCGACCTGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTACAC 108 Query 118 T 118 | Sbjct 107 T 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351955839400