Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq445 293 4e-77 seq446 286 5e-75 seq2114 275 1e-71 seq1960 178 2e-42 seq1959 141 1e-31 seq4 125 1e-26 >seq445 Length=5314 Score = 293 bits (324), Expect = 4e-77 Identities = 228/272 (84%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || ||| |||| ||||| |||| |||||| |||||||||||| ||| ||||| | | || Sbjct 4941 GGTGGGTTTCGCGCTTATATGCTTTCAGCGCTTATCCCTTCCCAACGTAGCTACTCTGCG 4882 Query 64 ATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 ||| | |||| | ||||| | | ||| ||||||| ||||| |||||||||||||||| Sbjct 4881 GTGCCCCTGGCGGGACAACAGATACACTAGAGGTTAGTCCAATTCGGTCCTCTCGTACTA 4822 Query 124 AGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGA 183 ||| ||| |||||||||| |||||| | ||||| |||||||||||||| ||| Sbjct 4821 GAATCAGATCCACTCAAATTTCTAACGCCCGCAGTAGATAGAGACCGAACTGTCTCACGA 4762 Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4761 CGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTT 4702 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| ||||||||||||||| Sbjct 4701 CTCCAGCCCCAGGATGTGACGAGCCGACATCG 4670 >seq446 Length=116643 Score = 286 bits (316), Expect = 5e-75 Identities = 227/273 (83%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||| ||| ||||||||||||||||| ||||||| ||| | ||||| ||| || Sbjct 5167 AGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTATATAGCTACCCTGC 5108 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 ||||| |||| ||||| ||| |||||||| | ||||||||||||||||||||||| Sbjct 5107 TATGCGGCTGGCGCCACAACAGGTCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACT 5048 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | |||||| |||| |||| ||||||| |||||| | |||||||||||||||||||| || Sbjct 5047 AGGGACAGATCCTGTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACG 4988 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||| ||| ||| || |||||| ||||||||||| ||||||||||||| Sbjct 4987 ACGTTCTGAACCCAACTCACGTACCGCTTTAAATGGCGAACAGCCATACCCTTGGGACCT 4928 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| || ||| |||||||| Sbjct 4927 GCTCCAGCCCCAGGATGCGATGAGTCGACATCG 4895 >seq2114 Length=760 Score = 275 bits (304), Expect = 1e-71 Identities = 205/240 (85%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||||||| |||||| |||||| |||| | | ||||| | | || |||| | Sbjct 521 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCAGCGTAGCTACTCTGCAATGCCCC 580 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | ||||| | | ||| ||||| | ||||| ||||||||||||||||||||| ||| Sbjct 581 TGGCGGAACAACAGATTCACTAGAGGCTAGTCCAACCCGGTCCTCTCGTACTAAGGTCAG 640 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | || |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 641 CCCCACTCAAAATTCCTACGCCCACAACAGATAGGGACCGAACTGTCTCGCGACGTTCTG 700 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |||| Sbjct 701 AACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTTCTCCAGC 760 >seq1960 Length=1006 Score = 178 bits (196), Expect = 2e-42 Identities = 151/186 (81%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | ||||| |||||||||| |||||| ||||| ||||| ||| ||||| ||| | Sbjct 533 GAGGCGCGCTTCCCGCTTAGATGCTTTCAGCGGTTATCGCTTCCGAACATAGCTACCCGG 592 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| || ||||||||||| ||||| ||||||||||||||| Sbjct 593 CAATGCCACTGGCGTGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTAC 652 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | |||| |||||||||| ||| ||||||| | | |||||||||||||||||||| | Sbjct 653 TAGGAGCAGCCCCTCTCAAATCTCCAACGCCCATGGCAGATAGGGACCGAACTGTCTCAC 712 Query 182 GACGTT 187 |||||| Sbjct 713 GACGTT 718 >seq1959 Length=733 Score = 141 bits (156), Expect = 1e-31 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||| ||| ||||| ||| || |||| |||| Sbjct 576 GCTTAGATGCTTTCAGCGGTTATCTATTCCGAACATAGCTACCCGGCAATGCCACTGGCG 635 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| || ||||||||||| ||||| ||||||||||||||||| | |||| ||| Sbjct 636 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 695 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAAC 173 ||||||| || ||| ||||| | |||||||||||||| Sbjct 696 CTCAAATCTCAAACGTCCACGGCAGATAGGGACCGAAC 733 >seq4 Length=33404 Score = 125 bits (138), Expect = 1e-26 Identities = 131/170 (77%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 |||||| ||||| || || |||||||||||||||| | ||| ||| || ||| | Sbjct 23643 CACCAGCGGTTTATCTTTCTCGGTCCTCTCGTACTAGAGTCAGGATTTCTTAATTTTTAT 23584 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 | | | | |||||||||||||||||||| |||||||||||||||||||| ||| || Sbjct 23583 ATAGC-AGTA--GATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACC 23527 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGA 257 | ||||| | ||||| | |||||||||| ||||| || |||||||| Sbjct 23526 TTTTTAAACTGTGAACACCAGTACCCTTGGGAGCTACTACACCCCCAGGA 23477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780698778552