Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1328 389 1e-105 seq1838 322 1e-85 seq445 268 3e-69 seq2185 260 4e-67 seq446 223 1e-55 seq4 176 1e-41 >seq1328 Length=80990 Score = 389 bits (430), Expect = 1e-105 Identities = 376/480 (78%), Gaps = 20/480 (4%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGA-TAACATAC 80 ||||||| ||||||||||||||||||||| || || ||| | ||||| |||| | Sbjct 4090 GAGCGGCAGACGGGTGAGTAACGCGTGGG-AATCTACCCATCTCT-ACGGAATAACGCAT 4033 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 |||| || ||||||||| ||||| | ||| | ||| |||| || | Sbjct 4032 GGAAACGTGTGCTAATACCG-----TATACGTCCTTCGGGAGAAAGATTTATCGGAGAT- 3979 Query 141 CGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200 |||| ||||||| ||||||||||||||| ||||| ||| ||||||| Sbjct 3978 ----------GGATGAGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAG 3929 Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 ||||||||| |||| | |||||||| ||||| |||||| ||| |||||||||||| || Sbjct 3928 GCGACGATCCATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCC 3869 Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 | |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 3868 AGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGC 3809 Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAAT 380 | |||||||||| |||||||||| | |||| |||||||||| || | ||||||||| Sbjct 3808 CATGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAAT 3749 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 ||||||| | || |||||||||||||||| |||||||||||||||||||||||| || Sbjct 3748 GACGGTAACCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAG 3689 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||||| | |||| ||||| |||||||||| | |||||| || | ||||||| Sbjct 3688 GGGGCTAGCGTTGTTCGGATTTACT-GGGCGTAAAGCGCACGTAGGCGGACTATTAAGTC 3630 >seq1838 Length=1451 Score = 322 bits (356), Expect = 1e-85 Identities = 286/363 (79%), Gaps = 26/363 (7%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| |||||||||||||| ||||| ||| ||||||||||||||| ||||| | ||| Sbjct 690 GTCGGATTAGCTAGTTGGCGGGGTAAAGGCCCACCAAGGCGACGATCCGTAGCTGGTCTG 631 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 630 AGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 571 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| ||||||||| |||| | ||||||| | || ||||| Sbjct 570 TGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATACCGCGTGGGTGAAGAAGG 511 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA----------------------- 379 ||||||||| ||||||| || | | | |||| || Sbjct 510 CCTTCGGGTTGTAAAGCCCTTTTGTTGGGAAAGAAAAGCAGTCGATTAATACTCGGTTGT 451 Query 380 --TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||||||| | || |||| |||||||||| |||||||||||||||||||||||| Sbjct 450 TCTGACGGTACCCAAAGAATAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACG 391 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||| || ||||||| |||||||||| |||||||||| |||||||||||||| |||| Sbjct 390 AAGGGTGCAAGCGTTACTCGGAATTACT-GGGCGTAAAGCGTGCGTAGGTGGTTGTTTAA 332 Query 498 GTC 500 ||| Sbjct 331 GTC 329 >seq445 Length=5314 Score = 268 bits (296), Expect = 3e-69 Identities = 375/516 (73%), Gaps = 30/516 (6%) Strand=Plus/Plus Query 11 TCTTCGGAGA---AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACAC 67 |||||||| | ||| ||||| ||||||| ||||||||| | || ||||| | ||| Sbjct 215 TCTTCGGATATAGAGACCGGCGCACGGGTGCGTAACGCGTATGCAATCTGCCTTTCACAG 274 Query 68 ACGGATAACATACCGAAAGGTATGCTAATACGAGATAATATACTTTTATC--GCATGGTA 125 | ||||| | | |||| | |||||| ||| ||| | | | |||| | Sbjct 275 AGGGATAGCCCAGAGAAATTTGGATTAATACCTCATAGTAT--TACGACCCGGCATCGG- 331 Query 126 GAAGTA-TCAAAGCTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAG 184 || ||| | |||| | |||| | ||| | ||||| ||||||||||||||||| Sbjct 332 GATGTAATTAAAGTCACAACGGTGAAAGATGAGCATGCGTCCCATTAGCTAGTTGGTAAG 391 Query 185 GTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGG 244 |||||||||||||||||| ||||| |||| | |||||||||| |||| ||||| ||| Sbjct 392 GTAACGGCTTACCAAGGCTACGATGGGTAGGGGTCCTGAGAGGGAGATCCCCCACACTGG 451 Query 245 AACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGC 304 |||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||| Sbjct 452 TACTGAGACACGGACCAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGC 511 Query 305 AAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAA--GC-T 360 |||||||| |||| | |||||||| ||||| || ||| || | ||||| || | Sbjct 512 GCAAGCCTGAACCAGCCATGCCGCGTGCAGGATGACGGTCCTATGGATTGTAAACTGCTT 571 Query 361 CTGTCCTCAAGGAA-----GAT-----AA------TGACGGTACTTGAGGAGGAAGCCCC 404 ||| | | ||| ||| || |||||||| | || ||| | Sbjct 572 TTGTACGAGAAGAAACACTGATTCGTGAATCAGCTTGACGGTATCGTAAGAATAAGGATC 631 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 |||||||| |||||||||||||||||||||||| ||| | ||||||||||||||| | Sbjct 632 GGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGGAATCA- 690 Query 465 TGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | ||| |||||||| |||||| ||||| |||||| Sbjct 691 TTGGGTTTAAAGGGTCCGTAGGCGGTTTGGTAAGTC 726 >seq2185 Length=1414 Score = 260 bits (288), Expect = 4e-67 Identities = 196/229 (86%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 269 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGC 328 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1414 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCAACGCCGC 1355 Query 329 GTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAA-----GATAATGAC 383 ||||| || || ||||||||||| ||||| |||| | || |||| || | |||| Sbjct 1354 GTGAGGGACGACGGCCTTCGGGTTGTAAACCTCTTTTAGCAGGGAAGAAGCGAAAGTGAC 1295 Query 384 GGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443 ||||| || || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1294 GGTACCTGCAGAAAAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGC 1235 Query 444 GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 || ||||||||||||||||| | |||||||||| | |||||| ||||| Sbjct 1234 GCAAGCGTTATCCGGAATTA-TTGGGCGTAAAGAGCTCGTAGGCGGTTT 1187 >seq446 Length=116643 Score = 223 bits (246), Expect = 1e-55 Identities = 265/360 (74%), Gaps = 21/360 (6%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| | ||||||||||||| ||||||||| |||||||||||||| | ||| || | Sbjct 548 GCGTGTCATTAGCTAGTTGGCGGGGTAACGGCCCACCAAGGCGACGATGACTAGGGGATC 607 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||| | ||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 608 TGAGAGGATGACCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 667 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA- 339 ||| ||||||||| |||||| || |||| |||| | |||||||| || || Sbjct 668 AGTAAGGAATATTGGTCAATGGAGGGAACTCTGAACCAGCCATGCCGCGTGCAGGAAGAC 727 Query 340 AGGCCTTCGGGTCGTAAA--GCT-----------------CTGTCCTCAAGGAAGATAAT 380 || ||| |||||||||| ||| || || | | | || | Sbjct 728 AGCCCTCTGGGTCGTAAACTGCTTTTATTCGGGAATAAACCTTTCTACGTGTAGGAAGCT 787 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 || |||| |||| ||| ||||||||| |||||||||||||||||||||||| || Sbjct 788 GAATGTACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAG 847 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | ||||||||||||| ||| | ||| ||||||||||||||| || || ||||||| Sbjct 848 GATCCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGCGGCTTATTAAGTC 906 >seq4 Length=33404 Score = 176 bits (194), Expect = 1e-41 Identities = 235/323 (73%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 171 AGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTG 230 || ||||||| | ||||| || | |||| | | ||| |||| | ||| |||| || Sbjct 14176 AGGTAGTTGGAAGGGTAAAAGCCAAACAAGCCAAAGATTCGTAGTTGGTCTGGGAGGATG 14235 Query 231 ATCGGCCACATTGGAACTGAGACACGGTCCAAACTCC-TACGGGAGGCAGCAGTGGGGAA 289 ||| |||||||||||| ||| | | | |||| ||| || ||||||||||||||||| Sbjct 14236 ATCAGCCACATTGGAATTGAAAGAAAGACCAACCTCGATA---GAGGCAGCAGTGGGGAA 14292 Query 290 TATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGG 349 ||||| |||||| || ||||| |||| |||||| | |||| | || |||| | | Sbjct 14293 TATTGGACAATGAGCGAAAGCTTGATCCAGCAATATCACGTGGGGGAAGAAG----TAGA 14348 Query 350 GTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409 ||||| | || | | || |||||||||||| || | || |||||||||| || Sbjct 14349 AATGTAAACCCCTTTTATTAATGAAGATAATGACAAACATTAAAGAAGAAGCCCCGGTTA 14408 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469 | | |||||||||| ||||||||| ||| | ||||| || |||| || || | | ||| Sbjct 14409 ATTTCGTGCCAGCAACCGCGGTAAAACGGAAGGGGCAAGTATTATTCGTAAGGA-TTGGG 14467 Query 470 CGTAAAGGGTGCGTAGGTGGTTT 492 |||||||||| ||||| |||| Sbjct 14468 CGTAAAGGGTATGTAGGCAGTTT 14490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497399591168