Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq371 412 1e-112 seq1754 205 3e-50 >seq371 Length=13317 Score = 412 bits (456), Expect = 1e-112 Identities = 269/295 (91%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| |||||||||||| | |||| ||||||| ||| |||||||||||||||||| Sbjct 9392 CTCCCACCTATTCTACACCTTCCGGGTCACTTCACAA-GTCAGACTAGAGTCAAGCTCAA 9334 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 9333 CAGGGTCTTCTTTCCCCGCTATCAATGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGT 9274 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 9273 GTGGTAGTTAGGGACAGTGGGAATCTCATTTATCCATTCATGCGCGTCACTAATTAGATG 9214 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 9213 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCTAGG 9154 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 9153 TTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGGAATCACCTTGCGTCAA 9099 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| | | |||| || ||| |||||| |||||||| Sbjct 9701 CTTTTGCTCTACGTGAGGTTTCTGTCCCCACTGAGCCCAGCTTTGGACACTTGCGTTATC 9642 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||| ||||||||||||||||||||||||||||||| | |||| Sbjct 9641 TTTTAACAAATGTGCCGCCCCAGCCAAACTCCCCACCTGAAACTGTC 9595 >seq1754 Length=363 Score = 205 bits (226), Expect = 3e-50 Identities = 222/286 (78%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 80 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACAG 139 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| ||||||||| |||||||||| ||||||||||||||| | ||| ||| Sbjct 140 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCATCGATGCGGGTCG 199 Query 128 ---GCCCG-CGA-AGGA---CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGC 178 ||||| ||| ||| ||||||| ||| ||| | | | | ||| || ||||| Sbjct 200 ACCGCCCGCCGAGCGGACAGCCTTAACACCAAAAACAAGAACAATAAAGTTCAATTCCGT 259 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--TTGCGCCGAAACGG 236 || || || ||||||| || |||||| ||||||||||||||| ||| ||| || | Sbjct 260 TTTATCGAATAAGTAAGGAATCGATAAAAGTAGTGGTATTTCACCGTTG-GCC--AAAGC 316 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACT 282 ||||||||||| |||||||||||| | ||||||||||| |||| Sbjct 317 CTCCCACTTATACTACACCTCTCATGATTCTTCACAAAGTCAGACT 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634981177536