Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq11008 185 4e-43 seq11876 127 9e-26 seq2313 104 1e-18 seq4214 95.1 5e-16 >seq11008 Length=525 Score = 185 bits (204), Expect = 4e-43 Identities = 156/192 (81%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3886 CTCATACTTGCCCGGCGAGGTGGTGTGGAAGAAGGTCACCCGGTAGCGGTTCTTCATGCC 3945 ||| || ||||||||||||||||||||||| || || || || ||||| ||| |||| Sbjct 192 CTCGTATTTGCCCGGCGAGGTGGTGTGGAAAAACGTGACGCGATAGCGCGACTTGCTGCC 133 Query 3946 CACAGCGGTGAGCTTCTGGAAAACGTTCTTGCGCTCGATGCGCGCACGCACCGCCTGATG 4005 ||| || |||||||||||||| ||| ||||||||||| ||||| ||||| ||| Sbjct 132 CACCGCTGTGAGCTTCTGGAACGTGTTTTTGCGCTCGATACGCGCCTTGACCGCAGAATG 73 Query 4006 AACGCGGTTGATCCACTGGGTCATGATGACCGCATCGCCGCCGTTCTGACCAAGAAGCGC 4065 | ||||||||||||||||||||||||||| | ||||| |||||||| || || ||||| Sbjct 72 CAGGCGGTTGATCCACTGGGTCATGATGACGCCGTCGCCACCGTTCTGGCCGAGCAGCGC 13 Query 4066 CCAGAAATTCTC 4077 ||| |||||||| Sbjct 12 CCAAAAATTCTC 1 >seq11876 Length=253 Score = 127 bits (140), Expect = 9e-26 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 4217 ACGTCCTTCGTGTCCACCAGTGTGAGCAACTGCTGCACGTCATCGACCTGCATGCCCAGG 4276 |||||||||||||| || |||| |||| ||||||| | |||||| ||| Sbjct 250 ACGTCCTTCGTGTCAACGCAAACCAGCAGCTGCCGCACGTCGCTCTCGGTCATGCCGAGG 191 Query 4277 TATTCCGCGATTCGCTCATGGTTGAGGCCATTGAGGCGCGCGAAGACCCGACGCCCCTTC 4336 | ||||| ||| ||| || || || | || || || || |||||||| ||| Sbjct 190 TGAGTGGCGATCTTCTCGTGGCGCAGCCCGTTCAACCGGGCAAACACGCGACGCCCTTTC 131 Query 4337 TTGATCGTCGGCAGGATGTGGTTCTTGACCGCGTCGTAGCTCTTGCCAGCACGCGGAACA 4396 |||| || ||||||||||| ||||| ||||||||||||||||| || || ||||| ||| Sbjct 130 TTGAGCGCGGGCAGGATGTGATTCTTTACCGCGTCGTAGCTCTTTCCGGCGCGCGGCACA 71 Query 4397 CCCTCGTTAAAAACCAGCAT 4416 || ||||| ||||||||||| Sbjct 70 CCTTCGTTGAAAACCAGCAT 51 >seq2313 Length=1558 Score = 104 bits (114), Expect = 1e-18 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 2125 CTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAGATCGCGGCATGA 2184 |||||| ||||||||||| | | ||| | | || | |||||| ||||| || |||||| Sbjct 543 CTCTGGATCGGCTCTTGCTTCCCCTCTCGGACACCCGACAAGGACGAGATTGCAGCATGA 484 Query 2185 TTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCGGTTTTTCTTTCC 2244 ||| | || ||||| |||| ||| || | ||||||||||||||||||||| || | Sbjct 483 CCGAGATGGATACGCACGACCGCATCAACCTAACCGGCCCTTGGGCCGGTTTTGGCTTTC 424 Query 2245 TCGGTGATCGTCTGATCACGCCCGAAGGCCGCGAGCTACTT---CCTGAAGATCTGGCCT 2301 | | | || |||| || || ||| | ||| ||| |||| ||| |||||| Sbjct 423 AGGCCGGCCACATGTTCACACCTGAGGGCTAC-AGC--CTTGAGCCTGTCGATATGGCCT 367 Query 2302 GGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGGA 2350 || ||| || ||| | | |||| ||||||||| | ||||||||| Sbjct 366 GGTGGTCGCTGACCTGCAACATCGCGCGGGAATGGCGGCTGATGATGGA 318 >seq4214 Length=855 Score = 95.1 bits (104), Expect = 5e-16 Identities = 182/258 (71%), Gaps = 18/258 (7%) Strand=Plus/Minus Query 6041 GTAACCCTGCCCCGCCCTGCCCTTGCGATCAGCCGCCGAAGAATCCGGCCACCTTCTTTG 6100 ||| | | ||||||||||||||| || |||||||| ||||| |||||||| ||||| | Sbjct 457 GTAGCACCGCCCCGCCCTGCCCT-GC-ATCAGCCG---AAGAAACCGGCCACTTTCTTCG 403 Query 6101 CTGCCCACTTGCCGAAGCCGACCAGCGCGATCAGCGCGGCGGCACCTGCGAAGGCGGTCA 6160 ||||||||||| |||||| | || ||||| | | ||| || || | ||||| | Sbjct 402 CTGCCCACTTGGTGAAGCCCAAGAGGGCGATGATGGTGGCCGCGCCGATCAGGGCGGGAA 343 Query 6161 GTGCACCGGCCACCGACAGGCCGCTGAGGATGCTTTCGTAATCCATGGTGAAACTCCTTT 6220 ||| |||| | |||||| | | || || | |||||||||| ||||| Sbjct 342 CGGCATCGGCAGCGCTCAGGCC-CGAAAGA--ATTGC---ATCCATGGTGTCTCTCCTAG 289 Query 6221 CA-TGAGTGGTTG---GG--TTACCGGTT-TTTGTCGAAGAACGTCGCCACGGAACCGGC 6273 || || |||||| || || |||||| |||||| || | ||| || ||| |||||| Sbjct 288 CATTGGTTGGTTGATTGGTTTTGCCGGTTATTTGTCAAACATCGTGGCGACGCTACCGGC 229 Query 6274 AATCCGACCGGCGACGAA 6291 || || || ||||||| Sbjct 228 CATGCGCCCCACGACGAA 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21983889882008