Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq1087 178 3e-40 seq93 113 1e-20 seq5294 98.7 3e-16 seq1310 96.9 9e-16 >seq1087 Length=202632 Score = 178 bits (196), Expect = 3e-40 Identities = 356/528 (67%), Gaps = 0/528 (0%) Strand=Plus/Minus Query 37693 CGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCT 37752 ||||||||| | ||||| || || ||||| | || || |||||| |||| | Sbjct 83916 CGGCGTCGACCGCGGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGAT 83857 Query 37753 CCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTC 37812 || ||| | | | || ||||| | |||| || || ||| ||||| || || Sbjct 83856 GCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATC 83797 Query 37813 CATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGA 37872 |||||| | || ||||| ||||| | |||||||| |||||| || |||| | |||| Sbjct 83796 CATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGA 83737 Query 37873 GAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTA 37932 || ||||||||||| |||||||| ||||| ||||| |||||||||||||| ||| | || Sbjct 83736 AAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTA 83677 Query 37933 CGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATG 37992 ||| || |||||||| ||| | | ||||| ||||| ||||| || Sbjct 83676 TGGCTATCAGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCAGATTGCGAA 83617 Query 37993 GGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAA 38052 | ||| | ||| || | |||||| |||| || || ||| | || ||| ||||| Sbjct 83616 TCTCGTCAGTGCGATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAA 83557 Query 38053 TGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGT 38112 | || | || || ||| ||||||||| || || | | || |||||||| || Sbjct 83556 TCCGGCGCTCGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGT 83497 Query 38113 CGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTT 38172 ||| |||| | | || ||| | | |||||||||| |||| ||| | || | Sbjct 83496 GGCCGACGGAAAGCTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGT 83437 Query 38173 GCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCA 38220 |||||| || ||||| ||| || ||| |||| | ||||| || || Sbjct 83436 GCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 83389 >seq93 Length=584700 Score = 113 bits (124), Expect = 1e-20 Identities = 203/297 (68%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 37651 AATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGA 37710 |||||||||||| ||||| || | || || | |||||||||||| |||||| || Sbjct 272962 AATGAAACAATACTTAGATTTAGTAAAATACGTTTTAGAAAACGGCAATCAAAAAGGTGA 272903 Query 37711 CCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGA 37770 |||||| || || ||| || || ||| |||| | || || | ||| || Sbjct 272902 CCGAACAGGAACAGGAACGAAAAGTGTTTTTGGCTACCAGATGCGTTTTGATTTAAGTGA 272843 Query 37771 TGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCT 37830 || || || | || || || |||||| | ||| | || ||||| || ||| |||| Sbjct 272842 AGGTTTCCCAATGGTTACGACAAAAAAACTCCATTTAAAATCGATCATCTACGAATTGCT 272783 Query 37831 TTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTG 37890 ||||||||||||||| ||||| || | ||| | |||| ||||| || | || || Sbjct 272782 TTGGTTTTTAAAAGGAGATACAAATATTAAATATCTTAAGGAAAATGGAGTTAAAATCTG 272723 Query 37891 GGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCG 37947 ||| || ||||| || || |||||| | || || ||||||| |||||||| Sbjct 272722 GGACGAATGGGCTGATTCTAATGGCGATTTAGGACCTGTTTACGGACATCAATGGCG 272666 >seq5294 Length=478 Score = 98.7 bits (108), Expect = 3e-16 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 37886 ATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGG 37945 || ||||| |||||||| || | |||||||| || || ||||| |||||| ||||||| Sbjct 46 ATCTGGGACGAGTGGGCCGATGCCAACGGCGACCTGGGTCCGATCTACGGCAAGCAATGG 105 Query 37946 CGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCA-TGGGTTGTCGAAGA 38004 ||| ||| || || || | |||||||||||| ||| ||| | || || || Sbjct 106 CGCAGCTGGGCCACCGCCGATGGCGGCAGCATCGACCAGAT-GCAGTGGCTGGTGGAGGA 164 Query 38005 GATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAA 38052 |||||| || || || |||| || |||||| |||| ||||| ||||| Sbjct 165 GATCAAGCGCAACCCCGATTCGCGGCGGCTGGTGGTCAGCGCCTGGAA 212 >seq1310 Length=146132 Score = 96.9 bits (106), Expect = 9e-16 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 37739 TTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAA 37798 || |||| ||| | | |||||| | || || || ||||| || || || || |||||| Sbjct 104788 TTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAA 104847 Query 37799 TTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTC 37858 | ||| | ||||| || | |||||| | |||||||||| || || || || | Sbjct 104848 CTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATT 104907 Query 37859 CGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGAT 37918 |||| || | | || || | ||| |||||||||||||| || |||||||| || Sbjct 104908 GGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGAC 104967 Query 37919 CTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGG 37954 || ||||| |||| || | |||||||| || ||| Sbjct 104968 CTGGGCCCTGTTTATGGATCACAATGGCGTTCATGG 105003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130619239834300