Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq126 360 6e-95 seq1719 302 1e-77 seq136 114 4e-21 >seq126 Length=461790 Score = 360 bits (398), Expect = 6e-95 Identities = 848/1261 (67%), Gaps = 36/1261 (3%) Strand=Plus/Minus Query 1667 TAATGTCAATTATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAA 1726 ||||| ||||| | | | || ||||| | || | || || || | ||||| |||| Sbjct 352911 TAATGAGTATTATAATTAAAGTTCACGCAAGACAAATTCTGGATTCCAGAGGTAATCCAA 352852 Query 1727 CACTTGAAGTAGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAG 1786 | |||| || || || |||||| || | || ||| | | ||||| || | Sbjct 352851 CTATTGAGGTTGATGTAGTAACTGAAAACGGAGTTTTAGGTAGAGCAGCTGTTCCATCTG 352792 Query 1787 GAGCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACG 1846 ||||||||||||| || |||||||| || ||| | ||||| || | |||||| || Sbjct 352791 GAGCATCAACTGGAGAGCACGAAGCTGTTGAATTACGTGACGGAGGTAAAGCT---TATC 352735 Query 1847 GTGGTCTTGGTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCA 1906 ||| || | || ||||| | || ||||| | ||||||||||| | | Sbjct 352734 TTGGAAAAGGAGTTTTGAATGCAGTGAACAATGTAAATACTGTTATTGCTGAAGAACTAG 352675 Query 1907 TCGGA--TTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGG 1964 | ||| ||| || ||| ||| | ||||| | |||||||| | | || || Sbjct 352674 TTGGAACTTCT--GTTTTTGAACAAAATACAATTGATCAATTAATGATCGATTTAGATGG 352617 Query 1965 TACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGC 2024 ||||| || ||| |||| | || || || || ||| | || || ||| | |||| || Sbjct 352616 AACTCCCAATAAATCTAAATTAGGAGCTAATGCAATTTTAGGAGTTTCTTTAGCTGCTGC 352557 Query 2025 ACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGGA--TTCAAC 2082 || ||||| || | |||| | | ||| | ||||| ||| |||| || ||| | Sbjct 352556 TAAAGCTGCTGCAAACGAACTTGGATTGCCATTATACAGATACGTTGGTGGTGTTTCTGC 352497 Query 2083 ACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCT 2142 | | | || | || ||||||||||||||||||||| || ||||||||||| || || Sbjct 352496 AA-ACACTT-TGCCGGTTCCAATGATGAACATCATCAATGGAGGTTCTCACTCTGATGCG 352439 Query 2143 CCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCG 2202 ||||| || |||||||| ||||||||| | |||| ||| | | || | | | || Sbjct 352438 CCAATTGCATTCCAAGAGTTTATGATTTTCCCTGTAAAAGCAACTTCTTTTACACATGCT 352379 Query 2203 CTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAAC-GTGGACT 2261 | | ||| ||||||| || ||| |||| | |||| ||| | || | || | Sbjct 352378 ATGCAAATGGGAACTGAAATTTTTCACA-GCTTGAAAAAAGTTTTACATGACAGAGG--T 352322 Query 2262 TGAA--ACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGA---ACTGAA 2316 | || || || || ||||| ||||||||||| || || ||| | || |||||| Sbjct 352321 TTAAGTACTGCTGTTGGTGATGAAGGTGGTTTTGCTCCAAATTTAGCTGGTGGTACTGAA 352262 Query 2317 GATGGTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGAC 2376 |||| | | || ||||||| |||| | ||| ||||| ||| ||| | || Sbjct 352261 GATGCTTTAGATACTATCAAATTAGCTGTTGAAAAAGCTGGTTATACTTTTGGTGACGAA 352202 Query 2377 GTATTTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTAC 2436 | | || | ||||||||||| | ||||| || || || | |||| ||| | || Sbjct 352201 ATTATGATTGCTCTTGACTGTGCTGCTTCTGAGTTTTA---TGTA-AACGGAAAAT--AC 352148 Query 2437 GACTACACTAAATTTGAAGGTGAAGGCGCTG--CTGTTC-GTACTGCTGCAGAACAAATC 2493 || ||||||||||||||||| ||| ||| | || | ||| ||| ||||||| Sbjct 352147 GATTACACTAAATTTGAAGGAGAA---ACTGGAAAGATCAGAACTTCTGAAGAACAAGCT 352091 Query 2494 GACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGAC 2553 || || | | ||| | | ||||| ||||| || |||||||||| |||||| || Sbjct 352090 GATTATTTAGCTGAACTTGCGGCTAAATATCCAATTATTTCTATCGAAGACGGTATGTAC 352031 Query 2554 GAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTG 2613 ||| | |||||| | || ||||||| | | |||||| |||| | |||||| ||||| Sbjct 352030 GAAGATGACTGGAATGGATGGAAATATTTAACTGAAAAAATTGGAGATAAAGTACAATTA 351971 Query 2614 GTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGA--AAAAGGTATTGCAGAAC 2671 ||||| || || || || || |||||| ||| | || | || ||||| | | || Sbjct 351970 GTTGGAGATGATTTATTTGTTACTAACGTAGCT--CGTTTATCAACTGGTATCGAAAAAG 351913 Query 2672 ACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTG 2731 ||||| || || | | |||||||| ||||| || ||||| || |||||| ||| Sbjct 351912 GAATCGCTAATTCTATTTTAGTAAAAGTTAATCAAATTGGAACTTTAACAGAAACTATTG 351853 Query 2732 ACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTG 2791 ||| | | ||||| ||| | ||||| |||||| | ||| | || |||||||| || | Sbjct 351852 CAGCTGTAAACATGGCTAAAAATGCTGGTTACACATCTGTAATGTCTCACCGTTCTGGAG 351793 Query 2792 AAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGA 2851 |||| |||||| ||||| ||||| | || ||||| ||| || || ||||| | Sbjct 351792 AAACAGAAGATAATACAATTGCTGACTTAGCTGTTGCTTTAAACTGCGGACAGATTAAAA 351733 Query 2852 CAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAG 2911 ||||||| || ||| |||| ||||| || |||||||| ||||| | | ||||||| Sbjct 351732 CAGGTTCTGCTTCTCGTTCTGATCGTATGGCAAAATACAATCAATTATTAAGAATCGAAG 351673 Query 2912 A 2912 | Sbjct 351672 A 351672 >seq1719 Length=44522 Score = 302 bits (334), Expect = 1e-77 Identities = 823/1252 (66%), Gaps = 30/1252 (2%) Strand=Plus/Plus Query 1684 GATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGT- 1742 ||||| | || || || | ||||| || |||||||| || || |||| ||||| || Sbjct 32847 GATGTTCATGCGCGGCAAATACTTGATTCCCGCGGTAATCCTACTATTGAGGTAGACGTA 32906 Query 1743 -TTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTG 1801 ||||| |||| |||| | || || | || |||||||| || ||||| |||| Sbjct 32907 ATTACAGAGAATGGTGTGCTT--GGCCGTGCAGCAGTACCTTCAGGTGCTTCAACGGGTG 32964 Query 1802 AACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTC 1861 |||||||| ||||| ||| | || ||| ||| || || || ||| | Sbjct 32965 TTCACGAAGCCGTAGAGCTTAGGGACAATGATAAATCTGTATATATGGGCAAAGGTGTTT 33024 Query 1862 AAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTAC 1921 |||||| |||| ||||| ||| | ||||| || | | | ||| | || ||| Sbjct 33025 TAAAAGCTGTTGCCAACGTTAACGATAAGATTGCCGATGCCTTAAAAGGAGTGGATGTAT 33084 Query 1922 GTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTA 1981 ||| ||| | | || || | ||||||| || || || || ||| ||||| | Sbjct 33085 TTGAGCAAAATGCGATCGATGACCTAATGATCAAACTGGATGGCACAGAAAATAAAGGAA 33144 Query 1982 AACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACT 2041 |||| |||||||| || ||| | ||||| ||| | || || || |||||||| | Sbjct 33145 AACTGGGTGCCAATGCCATTTTAGGTGTTTCTTTAGCCGTGGCTAAAGCAGCTGCACAGG 33204 Query 2042 A---CCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAA 2098 | || | | ||| | ||| | || |||| || | || | || || || | Sbjct 33205 AAAGCCGTCAG---CCATTATACCGTTATATTGGTGGTGTAAATGCCAATACCCTGCCCA 33261 Query 2099 CTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAG 2158 ||||||||||||||| | ||||| ||||||||||| || || || || ||||| || | Sbjct 33262 TCCCAATGATGAACATCGTAAACGGCGGTTCTCACTCTGATGCCCCTATTGCTTTTCAGG 33321 Query 2159 AATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTG 2218 |||||||||| | || | |||||| | | || ||||| | | ||||| | | Sbjct 33322 AATTTATGATCATGCCAGTTGGTGCGACTTCTTTTTCCGAAGCCTTAAGATGGGGAACAG 33381 Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTG 2278 || | || ||| || || || | | || | || ||| || || ||||||| Sbjct 33382 AAGTATTTCACAACCTGAAAGCCATTTTACATGACAGGGGCCTTTCTACGGCTGTAGGTG 33441 Query 2279 ACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCA 2338 ||||||||||||| || || ||| || || |||||||||| || ||||| || | | Sbjct 33442 ACGAAGGTGGTTTTGCCCCAACTTTTGATGGTACTGAAGATGCAGTGGAAACCATTCTTA 33501 Query 2339 AAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTG 2398 |||| |||||| || || || ||||||| | | | | | | ||||||| | Sbjct 33502 AAGCCATCGAAAAAGCAGGTTACAAACCAGGTGAGCAAATCTGCCTTGCTTTTGACTGCG 33561 Query 2399 CATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTG 2458 || | |||||||| ||| | ||| | ||| ||||| || || ||||||||||| | Sbjct 33562 CAGCCTCTGAATTTTACAA---AGACGGCAAA---TACGATTATACAAAATTTGAAGGCG 33615 Query 2459 AAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACA 2518 | | ||| ||||| | ||| ||||| || ||||| | | || || Sbjct 33616 ATAAAGGTGCCGTTCGCAGCAGTGCTGAACAGGCAGAATACCTGGCTCAGCTGTCAGCCA 33675 Query 2519 AATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAAT 2578 |||| ||||||||| |||| |||||||| |||| |||| | ||||||| || ||||||| Sbjct 33676 AATATCCAATCATCTCTATTGAAGATGGAATGGCCGAAGATGACTGGGCTGGCTGGAAAT 33735 Query 2579 CTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC-- 2636 || || ||| | |||| |||||| |||| || || || || || ||||| Sbjct 33736 TGCTGACCGAAAAAATCGGTGACCGCGTTCAACTGGTAGGAGATGATTTGTTTGTAACCA 33795 Query 2637 ---TAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTAT 2693 ||| || | |||| || ||||||||| | ||| |||| ||||| || || | Sbjct 33796 ATGTAAAAC-GTTTAC----AACAAGGTATTGACAACCACACTGCAAACTCTATTCTGGT 33850 Query 2694 CAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGA 2753 ||||| ||||| ||||| |||| || ||||| | | || | || | | | | Sbjct 33851 TAAAGTAAACCAGATCGGATCTTTAACAGAAACCATCAATGCCGT--AACTTTAGCACAA 33908 Query 2754 AGC--TGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATC 2811 ||| ||| || || | || | ||| | ||||| || |||||| | || || Sbjct 33909 AGCAATGGTTATACCTCGGTCATGAGCCACAGAAGTGGTGAGACCGAAGATACCACGATT 33968 Query 2812 GCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACT 2871 ||||| |||| || || ||| || || || || || ||||| || || || Sbjct 33969 GCTGACCTTGCCGTGGCCCTGAACTGCGGACAGATCAAAACCGGTTCTGCTTCCCGCTCT 34028 Query 2872 GACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTG 2923 ||| | || || ||||||||||| |||||||| || ||||| |||| |||| Sbjct 34029 GACAGGATCGCAAAATACAACCAGTTGCTTCGCATTGAAGAAGAACTGGGTG 34080 >seq136 Length=398197 Score = 114 bits (126), Expect = 4e-21 Identities = 201/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 1948 ATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGT 2007 ||||||| ||| || || || || ||||| | ||||| |||||||| ||||| || Sbjct 196910 ATGATCGATCTCGATGGCACGCCGAACAAGAGCCGTCTTGGCGCCAACGCCATTCTCGGC 196969 Query 2008 GTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTAC 2067 || || |||| || || || || ||||| | | | | || || ||| |||| Sbjct 196970 GTATCGCTCGCCGTTGCCAAGGCCGCCGCTGAATCCTCCGGCCTGCCGCTCTACCGCTAT 197029 Query 2068 CTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGT 2127 || |||||| ||| | | || || || || |||||||||||||||||||| || Sbjct 197030 CTCGGCGGACCGAACGCCCATGTCCTGCCGGTGCCGATGATGAACATCATCAACGGCGGC 197089 Query 2128 TCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCA 2187 | || | ||| ||| |||| ||| || ||||| |||||| | || | ||| ||| | Sbjct 197090 GCGCATGCCGACAATCCCATCGATTTTCAGGAATTCATGATTCTCCCGGTTGGCGCATCG 197149 Query 2188 ACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAA 2240 || | ||||| | |||| ||||| ||| | |||||| |||| ||||| Sbjct 197150 TCACTGGCCGAAGCCGTGCGTTACGGTGCGGAAGTGTTCCACACGCTGAAGAA 197202 Score = 114 bits (126), Expect = 4e-21 Identities = 261/390 (67%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| ||||||| |||||||| || ||| |||| | |||||||| || ||||||| Sbjct 197465 TACCCGATCATCAGCATCGAAGACGGCATGTCCGAAGATGACTGGGAAGGCTGGAAATAC 197524 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | | || | || || | || || ||||| | ||||| || || Sbjct 197525 CTGACCGATCTGATCGGCGACAAGTGCCAGCTCGTCGGCGACGATCTGTTCGTCACCAAT 197584 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACA-CGCTGCTAACTCAATCCTTATCAAAGT 2699 | ||| || | || || ||| || || || || || || |||| || Sbjct 197585 TCGGCTCGTCTGCGCGACGGCATCA-AGATGGGCGTGGCCAATTCCATTCTCGTCAAGGT 197643 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || ||| | |||||||||||||| |||| | |||| | ||||| Sbjct 197644 CAACCAGATCGGCACGTTGTCGGAAACTTTTGACGCGGTCGATACGGCGCACCGCGCTGG 197703 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 || || || || | || ||||| || |||||||| ||||| || || || || ||| | Sbjct 197704 CTATACGGCCGTCATGTCGCACCGCTCCGGTGAAACCGAAGACTCGACGATTGCCGATCT 197763 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || || || || || || || ||||| || || | || || | ||||| | Sbjct 197764 CGCCGTCGCCACCAATTGCGGACAGATCAAGACCGGCTCGCTTTCCCGCTCCGACCGGGT 197823 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGA 2909 || || |||||||| | | |||||||| Sbjct 197824 CGCCAAGTACAACCAGCTCATCCGTATCGA 197853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156013603742808