Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq6857 277 5e-70 seq5618 91.5 4e-14 >seq6857 Length=606 Score = 277 bits (306), Expect = 5e-70 Identities = 161/166 (97%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 10094 GCGAAGGCGGTCAGGTCAGGGCGGCCGAAGCCGGCCGGCGGGGTAGCGTCGGACACGTCG 10153 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 468 GCGAAGGCGGTCAGGTCAGGGCGGCCAAAGCCGGCCGGCGGGGTAGCGTCGGTCACGTCG 409 Query 10154 AGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTG 10213 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 408 AGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGATCTCGACGTCTATCTG 349 Query 10214 CGGACCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10259 ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 348 CGGACCGACGCGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 303 Score = 170 bits (188), Expect = 5e-38 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 10280 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGA 10339 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 404 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGATCTCGACGTCTATCTGCGGA 345 Query 10340 CCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10381 ||||||||||||||||||||||||||||||||| ||||| || Sbjct 344 CCGACGCGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 303 >seq5618 Length=666 Score = 91.5 bits (100), Expect = 4e-14 Identities = 115/152 (76%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 31093 TTCACCGACTGGCGCCAGCTCGCCGCA-ACGACCGACGCAGTGCAGGCAGGCGGCTGGGT 31151 |||||||||||||| ||||| ||||| || || ||||| ||||| | ||||| Sbjct 221 TTCACCGACTGGCGACAGCT-GCCGCTCACCACTGACGCGCTGCAGTGCGCCGGCTTCAC 163 Query 31152 GTGGCGCGGTGT-GCTCCCGTGGATCAAGCCCAATGC---GCGCCCGCAGCTCGGGCGCT 31207 ||||||||||| ||| |||| |||| || | | |||||| ||||| ||||||| Sbjct 162 CTGGCGCGGTGTTGCTGT-GTGGGACAAGACCGAGGGCGTGCGCCCCCAGCTGGGGCGCT 104 Query 31208 TCACCAACCAGGCCGAGTTCGTCGTGTGGGGA 31239 || |||||||||||||| || ||||||||| Sbjct 103 TCCGCAACCAGGCCGAGTATGTGGTGTGGGGA 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126706261749368