Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq1087 140 5e-28 seq5955 131 3e-25 seq1310 104 4e-17 seq93 89.7 8e-13 >seq1087 Length=202632 Score = 140 bits (154), Expect = 5e-28 Identities = 200/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 196086 TCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA 196145 |||| ||||| |||||| || |||| |||| | ||||||||||| |||||||| | Sbjct 83937 TCTT-CAGCATGTGCTCGATACCGGCGTCGACCGCGGCGACCGTACCGGGACAGGCAC-A 83880 Query 196146 CGT-CCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACC 196204 ||| || | ||||| |||||||| ||||||||| | || || || | || Sbjct 83879 CGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACG 83820 Query 196205 ACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGAC 196264 || |||||||| ||||| |||||||| || || |||||||||||||| || || || Sbjct 83819 ACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAA 83760 Query 196265 ACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAA 196324 || |||||| || || || || ||||| || | |||||| | || ||||| |||| Sbjct 83759 ACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAG 83700 Query 196325 CTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| | || |||||||| || || | |||||||| Sbjct 83699 AACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 83662 >seq5955 Length=632 Score = 131 bits (144), Expect = 3e-25 Identities = 131/170 (77%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCG 196840 || ||||||||||||||||| || || || |||||||||||||| |||||||||||||| Sbjct 347 TCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATCGCC 288 Query 196841 TCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTC 196900 || ||||| ||||||| ||| | || || ||||| | | | || || || ||| Sbjct 287 TCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGACTTC 228 Query 196901 GTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGT 196950 || ||||| ||||| ||| |||| ||||| ||||||| | || ||||| Sbjct 227 GTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGT 178 >seq1310 Length=146132 Score = 104 bits (114), Expect = 4e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 196163 CAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTG 196222 |||||| | ||| | || || || || || || ||||||||||| || ||||| ||| | Sbjct 104797 CAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTA 104856 Query 196223 CGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTG 196282 ||||| || || |||||| | ||||| | | ||||||||||| || |||||| Sbjct 104857 AAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTG 104916 Query 196283 AATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCG 196342 || | ||| ||| |||||| | |||||||| | ||| |||| ||||||| || Sbjct 104917 AAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCT 104976 Query 196343 GTTTACGGTAAGCAGTGGCGTGAATGG 196369 ||||| || || |||||| |||| Sbjct 104977 GTTTATGGATCACAATGGCGTTCATGG 105003 >seq93 Length=584700 Score = 89.7 bits (98), Expect = 8e-13 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 129378 GTAGTTCAGTTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 129437 Query 3857 -CAGTCCTGCCATACCTGGAGAA 3878 ||| || || ||| |||||| Sbjct 129438 CCAGACC-GCAATATTGGGAGAA 129459 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 130028 GTAGTTCAGTTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 130087 Query 3857 C 3857 | Sbjct 130088 C 130088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771413340245040