Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 7e-13 seq3078 86.0 8e-12 seq126 86.0 8e-12 >seq5 Length=514667 Score = 89.7 bits (98), Expect = 7e-13 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 183354 AGGGCGATTAGCGCAGC-GGT--AGCGCACCTCCTTTACACGGAGATGGTCGGGGGTTCG 183410 |||||||||||| |||| ||| || ||||||| ||||||| ||| ||||||||||||| Sbjct 79455 AGGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCG 79514 Query 183411 AATCCCTCATCGCCCATAGTATTCC 183435 || ||||||||||||| | ||||| Sbjct 79515 AACCCCTCATCGCCCACAAAATTCC 79539 >seq3078 Length=957 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 183355 GGGCGATTAGCGCAGCGGTAGCGCACCTCCTTTACACGGAGATGGTCGGGGGTTCGAATC 183414 ||| | ||||| ||||||||| || |||||||||||||||| ||||||||||||||| | Sbjct 104 GGGTGCTTAGCTCAGCGGTAGAGCGTCTCCTTTACACGGAGAGGGTCGGGGGTTCGAAAC 45 Query 183415 CCTCATCGCCCA 183426 ||||| | |||| Sbjct 44 CCTCAGCACCCA 33 >seq126 Length=461790 Score = 86.0 bits (94), Expect = 8e-12 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 183354 AGGGCGATTAGCGCAGC-GGT--AGCGCACCTCCTTTACACGGAGATGGTCGGGGGTTCG 183410 |||||||||||| |||| ||| || ||||||| ||||||| ||| ||||||||||||| Sbjct 441732 AGGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCG 441791 Query 183411 AATCCCTCATCGCCCA 183426 || ||||||||||||| Sbjct 441792 AACCCCTCATCGCCCA 441807 Score = 86.0 bits (94), Expect = 8e-12 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 183354 AGGGCGATTAGCGCAGC-GGT--AGCGCACCTCCTTTACACGGAGATGGTCGGGGGTTCG 183410 |||||||||||| |||| ||| || ||||||| ||||||| ||| ||||||||||||| Sbjct 441962 AGGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCG 442021 Query 183411 AATCCCTCATCGCCCA 183426 || ||||||||||||| Sbjct 442022 AACCCCTCATCGCCCA 442037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633973934268000