Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq2271 174 5e-39 seq6167 87.8 5e-13 >seq2271 Length=37941 Score = 174 bits (192), Expect = 5e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 7096 GATGCACAGCAAAGGGTTGATGCTGCGCGCAATGACGCTGTCAATGCTGCTGCTAAGTCT 7155 || || ||||| ||| | || ||||||||||| ||| | ||||||| ||| || Sbjct 7644 GAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGCT 7703 Query 7156 GGCAGGTTGCAGCAACAGCTCGCAAATATCCGCAAGCAGCTC-GTCGGATATTCCACCAC 7214 ||| |||||||||||||||||| ||||| |||||||| | | | ||| | |||| Sbjct 7704 GGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCAC 7762 Query 7215 TGAGTCCATTGGCAATCCAGCCGCAGAAACCGGAGTTTTGCTTGGAGACGTGCTCAGCAA 7274 | || ||| |||||||||| |||||||||||||||| |||||||||||||| Sbjct 7763 TATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCAA 7822 Query 7275 ATCTGTCGAAAGAAATCGACAGCTGGCAGATTACGCTGACAGGGCAAGAGAAGCAGGATT 7334 |||| |||| |||| ||||| |||||||| ||||||||| |||| ||||| ||| Sbjct 7823 ATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGACG 7882 Query 7335 AGCGTGTGAGGCGCAGTACAATTCGCTG 7362 || ||||| ||||||| |||||||| Sbjct 7883 AGTCTGTGAAAAGCAGTACGATTCGCTG 7910 >seq6167 Length=616 Score = 87.8 bits (96), Expect = 5e-13 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 33691 TAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATA 33750 || || || | ||| || | ||||| |||||||| | ||| ||||||||||| || | Sbjct 427 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 368 Query 33751 ACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGAT 33810 || |||||||||||||| || |||||| |||| || || || ||| ||| | Sbjct 367 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 308 Query 33811 TCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCT 33870 || || || || || | ||| || || ||||| || || || ||||| || ||||| Sbjct 307 TCTGACGTGGCGACCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCC 248 Query 33871 GGGTCCTGGCC 33881 || || | ||| Sbjct 247 GGATCATTGCC 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144949762191136