Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq126 149 9e-31 seq734 118 1e-21 seq446 104 3e-17 seq445 102 1e-16 >seq126 Length=461790 Score = 149 bits (164), Expect = 9e-31 Identities = 491/764 (64%), Gaps = 27/764 (4%) Strand=Plus/Minus Query 162096 AATGAAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACT 162155 ||||||| |||||||||| || || || ||||| |||||||| | || ||||||| | Sbjct 314195 AATGAAAATAGCACTTATAACAGGAATTACAGGTCAAGATGGGGCATATTTAGCTGATTT 314136 Query 162156 TCTCCTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATTAACAC 162215 | | | |||||||| |||||||||||||| |||||| |||| | |||| || Sbjct 314135 ATTATTAAAAAAAGGATACGAAGTTCACGGTATTAAACGTCGTAGTTCTCTATTTAATAC 314076 Query 162216 CCACAGAATTGACCAT----------ATCTT-----------TGACCGCATCACTCTCCA 162254 | | ||||| ||| ||| | || || | | | || Sbjct 314075 AGATCGTATTGATCATTTATACCAAGATCCTCATGAAGAAAATGTACGTTTTAAATTGCA 314016 Query 162255 TTATGGAGACCTTACCGATGCTTTGAGTATCGTATCTATTATTAAAACAGTTCAACCAGA 162314 ||||||||| | | || | | | | || ||||| || ||| |||||||| Sbjct 314015 TTATGGAGATTTAAGTGACTCAACTAATTTAATAAGAATTATACAAGAAGTACAACCAGA 313956 Query 162315 TGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAATA 162374 |||||| ||||| || || || ||||||||| || || |||||| || ||||| Sbjct 313955 TGAAATTTATAATCTTGGTGCGATGAGTCACGTAAAAGTAAGTTTTGATACTCCAGAATA 313896 Query 162375 CACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTGG 162434 || || | | || | | || ||| || | | ||||||| | ||| | || | Sbjct 313895 TACTGCTAATGCTGATGGTATAGGAACTTTACGCTTATTAGAAGCAATGCGTATCCT--G 313838 Query 162435 TATGGAATCATACGTAAG---AATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGT 162491 || || || | || ||| || ||||| || |||| | ||||| |||| Sbjct 313837 AATTTAA-CAAAGAAAACCAAAATATATCAAGCTTCTACATCTGAGTTGTATGGCTTAGT 313779 Query 162492 TCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGC 162551 ||||| || || ||||| |||||| | ||||| || || ||||||| |||||| Sbjct 313778 TCAGGCAGTTCCTCAATCAGAAAGCACTCCTTTTTATCCTCGTTCTCCTTATGCAGTTGC 313719 Query 162552 TAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTC 162611 ||| | |||| | ||||| | | ||| || || ||| |||| || ||| | Sbjct 313718 AAAAATGTATGCTTATTGGATTACCGTAAATTATAGAGAAGCATATGGTATGTTTGCGTG 313659 Query 162612 TAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAA 162671 | |||||| |||| ||||| ||||| | |||||||| || || ||||| || || Sbjct 313658 CAATGGTATTTTATTTAATCATGAAAGTCCTTTAAGAGGAGAAACTTTTGTCACTCGTAA 313599 Query 162672 GATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAA 162731 || |||| | || ||| | || | || | || || | ||||| Sbjct 313598 AATTACTAGAGCGGTTTCTAAAATGGCATTAGGTATGCAGGATAATTTATTTTTAGGAAA 313539 Query 162732 CCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGAT 162791 | | |||| || | || ||||| || || ||||| || || |||||||||||| |||| Sbjct 313538 CTTAGATGCGAGAAGAGATTGGGGGCATGCAAAAGATTATGTTGAGGCTATGTGGCTGAT 313479 Query 162792 GCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTG 162835 | |||||||| | || || |||||||| || |||||||||| Sbjct 313478 TTTGCAGCAAGATCAACCTGAAGATTATGTAATTGCAACTGGTG 313435 >seq734 Length=61306 Score = 118 bits (130), Expect = 1e-21 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 |||||| | |||||||| || | | ||||| ||| |||||||| ||||||||| Sbjct 13260 GGTATTTTGTTCAATCATGAGTCGCCTAGAAGAGGTATGACATTCGTCACTCGCAAGATC 13201 Query 162676 GTCCGAGCCTTGTCCCGAA--TTAGTGTGGGACTCCAAAGTGA-TCTACAACTTGGAAAC 162732 ||| |||| | || | | | || ||| ||| | ||| | || || ||| Sbjct 13200 ACTCGATA--TGTCGCCAAGGTCAAGCTTGG-CTCACAAGAAACTCTCTATCTAGGTAAC 13144 Query 162733 CTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATG 162792 |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 13143 ATCAATGCCAAGCGTGACTGGGGTCACGCCAGGGACTACGTAGAGGCTATGTGGTTGATG 13084 Query 162793 CTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 || || || || |||||||| || | ||| || || ||||| ||| Sbjct 13083 CTGCAACAGGACAAGCCAGAGGACTTTGTTATTGCCACTGGCGAG 13039 >seq446 Length=116643 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 2102 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 2161 Query 142852 TCCGTTATTCTCCACCA 142868 ||||||||||||||||| Sbjct 2162 TCCGTTATTCTCCACCA 2178 >seq445 Length=5314 Score = 102 bits (112), Expect = 1e-16 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 1932 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 1991 Query 142852 TCCGTTATTCTCCACCAA 142869 ||||||||||||||| || Sbjct 1992 TCCGTTATTCTCCACTAA 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691343536162320