Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 154 1e-32 seq2 95.1 1e-14 >seq4 Length=5450249 Score = 154 bits (170), Expect = 1e-32 Identities = 622/962 (65%), Gaps = 27/962 (3%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||||| ||||| || | ||| || || || || || || || || || || | || Sbjct 1505027 ACAAACTTTGGAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTG 1504968 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || | | || ||||| || |||||||| | | ||||| || ||||||| |||||| Sbjct 1504967 TATTGAATGATCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTG 1504908 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 || ||| || ||||||||||||| ||| | ||||| || || |||||||| ||| Sbjct 1504907 GATTTAGCATTACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGAC 1504848 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT----ACCGCCCTACCTTT 66228 || || |||||| |||||| | | || || | |||| | | || Sbjct 1504847 TCCATAATGGCGAACCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTT 1504788 Query 66229 GCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCA---TACTTCGGACAGACA 66285 || |||||| | |||| | | ||| | ||| | | ||| | |||| Sbjct 1504787 GC-TTCGTATTTCAAATAGA-GAGCACGATG--TTCCTCTGAGTGAGTTTCAGCAAGACC 1504732 Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| | | |||||| | || | |||||| |||| ||||| ||||| |||||| Sbjct 1504731 TGGTGCTTCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAA 1504672 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GT 66404 | |||| | ||| || || ||||| ||||| | |||| ||| || | || || Sbjct 1504671 AATATCACTAACCCAAAGAGCATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGT 1504612 Query 66405 GATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | ||||| | || | || ||||||| || || ||||||||||||| ||| | || Sbjct 1504611 G-TTTTTCTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGG 1504553 Query 66465 CGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGA 66524 | || | ||| | | ||||| |||||||| |||||||| ||||| || ||||| | Sbjct 1504552 CAAAGGCACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAA 1504493 Query 66525 CACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTC 66584 |||| | ||| || || | || || | | |||||||| || ||| | | | Sbjct 1504492 CACGAAGCATTGGCACCAAACCATTGCTTGTACCATTGGTACC-ACGA--ATATAACTTT 1504436 Query 66585 G---TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641 | || || || | ||||| | ||||||||||||||| |||| || ||| | Sbjct 1504435 GAGCAGCACGAATCTTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTG 1504376 Query 66642 CACAATCGGCC--ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 |||| | | | |||| |||| || || || || || |||| || | | Sbjct 1504375 CACATTGTTTCAAAGTGTCATAAATA--CCATCGATTGAATCCTCCTTCATTTGAACCAA 1504318 Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 | | || || | ||| ||| ||||| | || ||| || || ||||| || || Sbjct 1504317 GAAACAAGATGACATTTGTGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGCATG 1504258 Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819 || || | | ||||| ||||| || | |||| ||| || | || |||||| Sbjct 1504257 AGTGAACAATTTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCC 1504198 Query 66820 ATGAATCCCGAGTGCACA-TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCT 66878 ||| || || | || | | ||||||| | || ||| || || ||||| | | | | Sbjct 1504197 ATGGATACC-AATGGAGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTTACCAT 1504139 Query 66879 TGATATGCATTAAG-TAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAA 66937 ||||| | || ||| ||||| ||||||| || |||| |||||| | ||||| |||| Sbjct 1504138 TGATACG-ATGAAGATAGGAACGTTCCAATGTTTTGAATCCAAAGAAATCGTAATCGAAA 1504080 Query 66938 TC 66939 || Sbjct 1504079 TC 1504078 >seq2 Length=8484197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 |||||| ||||| ||| | |||||||| | || |||||| |||||||||||||| | Sbjct 2356681 CATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATTTTTCAGTGGAAGTT 2356740 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 || |||| ||||||||||| || | || | |||| ||| | || || |||| Sbjct 2356741 TTTGTTCAATATTTTGGTTGAAAAAGAGAGGTTTAATGCAAGGTTTAACATTTTCAAATG 2356800 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | || || ||||| ||||| || | ||||||||||| || Sbjct 2356801 AATTAATTTCACGTGACGAAGGTTTACATTGTGATTTCGC 2356840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 |||||| ||||| ||| | |||||||| | || |||||| |||||||||||||| | Sbjct 3675105 CATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATTTTTCAGTGGAAGTT 3675046 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 || |||| ||||||||||| || | || | |||| ||| | || || |||| Sbjct 3675045 TTTGTTCAATATTTTGGTTGAAAAAGAGAGGTTTAATGCAAGGTTTAACATTTTCAAATG 3674986 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | || || ||||| ||||| || | ||||||||||| || Sbjct 3674985 AATTAATTTCACGTGACGAAGGTTTACATTGTGATTTCGC 3674946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567801340240