Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq816 210 7e-52 >seq816 Length=9727 Score = 210 bits (232), Expect = 7e-52 Identities = 247/330 (75%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| ||||||||||| | ||| |||| | ||||| Sbjct 5994 ATTAGGTAGTTGGTGGGGTAAAGGCTTACCAAGCCAGAGATTCGTAGGTGGTTCGAGAGA 6053 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| ||||||||| | ||| | | | |||||||| | | |||| ||||| || Sbjct 6054 ATGATCATCCACATTGGTATTGAAAGAAAGACCAAACTCTGAAG--AGGCTGCAGTAAGG 6111 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||||||| |||||| || ||||| |||| |||| || | | ||||| || |||| | Sbjct 6112 AATATTGGACAATGAGCGAAAGCTTGATCCAGCTACACTGAGTGAGGGAAGAAG----TA 6167 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGC 407 | |||||| |||| | |||||||| |||||| | || | || ||| |||||| Sbjct 6168 AAG-CGTAAACCTCTTTTGATAAGGAAGAAAATGACAAAAATTAAAGAATAAGTCCCGGC 6226 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 ||| | |||||||||||||||||||||||| ||||||| ||| |||| || || | | | Sbjct 6227 TAATTTCGTGCCAGCAGCCGCGGTAATACGGAGGGGGCAAGCATTATTCGTAAGGA-TTG 6285 Query 468 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||||||||||||||||||||| |||| || Sbjct 6286 GGCGTAAAGGGTGCGTAGGTGGGTTCTCAA 6315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497553409664