Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20intermedium_20[genbank_20GCA_5F000277465.1_202012- 07-10] 3,111 sequences; 30,529,520 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2826 239 4e-58 seq316 102 6e-17 >seq2826 Length=2534 Score = 239 bits (264), Expect = 4e-58 Identities = 981/1524 (64%), Gaps = 57/1524 (4%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || |||| |||||| | || | |||||||||||| || || Sbjct 263 ATCAACAGTGAATTGAATTGCATCAGCAGCTGGACGAGTACGAAGATAGTACATACCAGT 322 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| | || ||||| ||| || ||||| || | | ||| ||| | | || || Sbjct 323 CTTTAAACCTTTCTTCCAAGAATAAAAGTGCATTGAGGTGAGTTTGGCAAAGGTTGGTTC 382 Query 65197 GGCCACATGCATA--TTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 || | || | | || || ||||| ||||| ||| || ||||||||| || ||| Sbjct 383 AGCGA--TGAAAACGTTGAAACTTTGACTTTGATCAATGAAAGCACCACGATCAGCGGCC 440 Query 65255 ATGTCAATGATACGACGTCC-CGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTC 65313 || ||||||| | | | ||| || ||||| ||||| || || || | || Sbjct 441 ATATCAATGAGAGTTCTTTGACGA-ATTTCCCAAACGGTTTTATAGAGTTCTTTCAATTC 499 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | |||||| | ||||| |||| ||||||||| |||||| || |||| ||| Sbjct 500 ATCTGGAATGCCACCAATGGATTGGATTGAACCACGTGCTGCAATGATTTGATTCTTCAT 559 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 | || ||| | |||||| || ||||||| | | ||| || ||||| || Sbjct 560 CTCTGGTGTCCAAATACCCAATTCCATAAGATCCTCCAACAATTGTTTATTGACGATAGT 619 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||| || | || ||||||||| || ||||| || ||| ||||||||| |||| Sbjct 620 AAACTCACCAGCCAATACACGACGACTGTAAATGTTTGAAGTGTATGGTTCAAAGCATTC 679 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 |||| || || ||||| ||| || || |||||||| || || | || | ||||| Sbjct 680 GTTGTTACCAAGGATTTGACTAGTTGAAGCGGTTGGCATTGGTGCAATTAAGAGGGAGTT 739 Query 65554 TCGCAATCCG--TTCATTT-CAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTT 65610 || || || || ||| | || || | | || |||| ||||| || | Sbjct 740 ACGTAAACCACCTTTATTGACGATCTTATCTTTTAGGTCTGCCCAATTCCAA--CG--TG 795 Query 65611 ATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670 | | | || ||| ||||||||| | ||| ||| | || | || ||||| || Sbjct 796 AACTTGGAGT--CACTTTCCACATATCGTATTGAAGGATACCTTTGGATGCTGGTGAGCC 853 Query 65671 GAGGAAACTATCGTACACTCCCTC-CTCCTTGGCAAGT--TGACAGCTGGTCTCGAGTGC 65727 ||||| || || || || | || ||| | ||| || |||| | || Sbjct 854 TTGGAAAGACTCATATGGACCATCACGTAGTGCCAATTCATGAGAGGCGGTC---AAAGC 910 Query 65728 GGCAAAATAAATGGTCTC-GAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 || ||||| ||||| || | | | | | |||| || || || || | || || Sbjct 911 TGCGAAATAGATGGTTTCAGCGATTTCAACATTTAATTTAGCG-GCGGCAACACTATCAA 969 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 | ||||||| ||| | | ||| ||||| | |||||| | |||||||| || |||| Sbjct 970 AAGGCATACGCATTTGAATGAAAACATCGGCTAAACCTTGGATACCAATACCAATTGGAC 1029 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 |||| | | ||| ||| | | ||||| ||||| || | || ||| || || Sbjct 1030 GATGTCTAAGATTTGAAGTTTTAGCCTCGACCACAGGATAAAAGTTACGATCAATGATAA 1089 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGAT----ACGTCGCAAT--TGTTCGAAATCAA 65960 || | |||| || | || | ||| | | | | | || || || || Sbjct 1090 CGTTGAGATTGACAGTGATCAACTTGGTGATTTCAAAGAGGAATTGATGATCAAACTCCT 1149 Query 65961 AATGTTTAGGACGATCGGGAGTGCCGGAC-----ACCACA-AACTTGGGAAGGGCAAGAG 66014 | ||| ||| |||| | || | | || | || || |||||||||| | Sbjct 1150 TCTCTTTTGGA---TCGGTTGAACCCGTCTTTTGACGAATGAATTTTGGAAGGGCAATTG 1206 Query 66015 ATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACA 66074 | ||||| ||||| || || || || || || | || || | | ||||| ||||| | Sbjct 1207 AGGCGAGATTGCAAACTGCAATTTCATCTGGTGATGTGTATTGAATGATTTCAGTGCAAA 1266 Query 66075 GATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCT 66134 ||||||| | | ||||| || | ||| |||||||| ||| |||||| || |||| Sbjct 1267 GATTACTACTACTAATGGTACCGAGATTTTGTTGATTGGATTTGGAATTGCAAGCGTCCT 1326 Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAG 66194 | |||| ||| | || || || || |||||||| || || || |||||| |||||| Sbjct 1327 TATACAAGATGAATGGTGTACCAGTTTCAACTTGTGATTCCATAATGGCGAACCAAAGTT 1386 Query 66195 CGCGTGCCTTCACCGTACGTACCGCCCTACCT----TTGCGTTCGTAATGTTCGTAGAGG 66250 | |||| || | |||| || || |||| | | || | | ||||||| Sbjct 1387 CTTGTGCTTTGATTACACGTCTTGCGAGGTCTGGTGTTGCCT-CATACTTTAAGTAGAGG 1445 Query 66251 ------TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACAC 66304 ||||| ||| | | ||| | |||| || | || |||||| Sbjct 1446 GCACGATGTTCTTGGGAATGAGT------TTCAGCGAGACCGGGTGCTTCGTTTGGACAA 1499 Query 66305 ATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGG 66364 | || ||||||||||||| ||||| ||||| |||||| | |||| | ||||||| Sbjct 1500 AAGAGTGACCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTAACCCAGAGG 1559 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAG 66423 || ||||| ||||| | |||| |||||| |||| ||| ||||| | |||| Sbjct 1560 GCATAGAATAGATCTCTAGCTCTCATCTCCTCCTTGCCAGTG-TTTTTCTTGAGATCGAT 1618 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 |||||||||| |||||||||||||| |||| ||| | ||| || | ||| | | ||| Sbjct 1619 AAACTCAAAGACATCGGCATGCCATGGCTCCAAGTATACGGCAAAGGCACCCTTTCTTTT 1678 Query 66484 GCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAG 66543 ||| |||||||| |||||||| |||||| || ||||| ||||| | ||| ||||| | Sbjct 1679 GCCACCACCTTGATCGACGTAACGAGCGGTATCATTGAAAACACGAAGCATTGGTACCAA 1738 Query 66544 CCCGTTAGATTTGCCATTGGTGCC 66567 || || |||||||||| || Sbjct 1739 ACCATTGCTAGTGCCATTGGTACC 1762 >seq316 Length=22015 Score = 102 bits (112), Expect = 6e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 |||||| ||||| ||| | |||||||| | || |||||| ||||||||||||| | Sbjct 20622 CATTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATTTTTCAGTGGTAGTT 20681 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 || |||| ||||||||||| || | || | ||||| ||| | || || |||| Sbjct 20682 TTTGTTCAATTTTTTGGTTGAAAAAGAGAGGTTTAATGCCAGGTTTAACATTTTCAAATG 20741 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 | ||||| ||||| || || || | ||||||||||||||| Sbjct 20742 AATTGATTTCACGTGATGAAGGTTTACATTGTGATTTTGCT 20782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552926085040