Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1400 336 4e-90 seq3 187 5e-45 seq158 185 2e-44 seq1401 181 2e-43 seq2584 105 1e-20 >seq1400 Length=5517 Score = 336 bits (372), Expect = 4e-90 Identities = 275/333 (83%), Gaps = 1/333 (0%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| |||||| |||||||||| |||||| | | | || |||||||||||||||| Sbjct 2897 CCCGAACAGGGGAGTGAAATAGAACCTGAAACTGTGTGCTTACAAGCGGTCGGAGCGTCC 2956 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | | |||||||||||||||||||||||||||||||||||||| || || | || || Sbjct 2957 AGGTGGCGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACTCTTCTCTGGCAAG 3016 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||| | || || | || | |||||| ||||||||| || || |||||| ||| Sbjct 3017 GTTAAGTGTTTAAGACACGG-ATCCGAAGCGAAAGCGAGTCTGAATAGGGCGTATAGTCA 3075 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 | || | ||||||||||||||||||||||||||| | |||||||||| |||||||| | Sbjct 3076 GGGGAGGTAGACGCGAAACCTTGTGATCTACCCATGGACAGGTTGAAGGTGCGGTAACAC 3135 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 || ||||||||||||||| ||||||||||||||||| ||||||| | |||||||||| Sbjct 3136 GTACTGGAGGACCGAACCGATAAACGTTGAAAAGTTTCCGGATGATCTGTGGGTAGGGGT 3195 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||| ||||||||||||||||||||||||| Sbjct 3196 GAAAGGCTAATCAAACTGGGAAATAGCTCGTAC 3228 >seq3 Length=3814 Score = 187 bits (206), Expect = 5e-45 Identities = 238/325 (73%), Gaps = 7/325 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA-TTC 69 ||||| |||||||||| |||||| ||| || ||||||| || ||||| || | ||| Sbjct 1090 AGGGGAGTGAAATAGATCCTGAAACCGTATGCGTACAAGCAGTGGGAGCAGACTTTGTTC 1149 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||| |||| ||||||| |||||| | | ||| ||| | ||| ||||| |||| Sbjct 1150 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATTT-TCAGTGGCGAGCTTAAC 1208 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || || || || ||||||||| ||||| |||||| | ||| | ||| Sbjct 1209 CGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGA 1263 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| | |||||| ||| | ||||||||||| |||||| | || Sbjct 1264 ATAGACCCGAAACCGGGCGATCTATCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 1323 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| | |||||||||||| |||||||| | || | || |||||||| Sbjct 1324 GAGGACCGAACCGACTACCGTTGAAAAGTTAGCGGATGACCTGTGGATCGGAGTGAAAGG 1383 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 | |||||| || ||| |||||| || Sbjct 1384 CTAATCAAGCTCGGAGATAGCTGGT 1408 >seq158 Length=3153 Score = 185 bits (204), Expect = 2e-44 Identities = 236/324 (73%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| | || ||||| || | ||| Sbjct 2649 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCATACAAACAGTAGGAGCGGACTTGTTCC 2590 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || ||||||| Sbjct 2589 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGGTTAAC- 2532 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 ||| | ||||| || |||| |||| | || ||||||| ||| | ||| Sbjct 2531 ----CAGATAGGGAAGCCGTAGAGAAATCGAGTCCGAATAGGGCGATCAGTCGCTGGGTG 2476 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| ||||||||| || | |||| ||||| |||||||| || ||| Sbjct 2475 TAGACCCGAAACCAAGTGATCTACTCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 2416 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||||||| || |||||||| || |||||| | ||||||||||||||||| Sbjct 2415 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 2356 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||||||||| || Sbjct 2355 TAAACAAACTTGGAAATAGCTGGT 2332 >seq1401 Length=5644 Score = 181 bits (200), Expect = 2e-43 Identities = 252/348 (72%), Gaps = 19/348 (5%) Strand=Plus/Plus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| |||| ||||| | ||| ||||| Sbjct 2718 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGCGCTTACAATCCGTCAGAGCC 2776 Query 61 ---GAGTGATTC---------GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA 108 ||| || ||||| ||||||||||||| | ||||||||| ||||||| Sbjct 2777 TTCGAGCAGTTTACTGCTGGGGGTGATGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTA 2836 Query 109 GTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAA 168 || | |||||||||| | | || | |||||| || ||||||||| | || Sbjct 2837 GTGGCATGTCGCGAGGTTAACC-CGTGTGG---GGTAGCCGTAGCGAAAGCGAGTCCGAA 2892 Query 169 CAGGGCGA-CG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGT 226 ||||||| || ||| | || |||||| |||| | |||||||||||| | ||||| Sbjct 2893 TAGGGCGATCGTAGTGGCATGCTCTAGACCCGAAGCGGAGTGATCTACCCATGGCCAGGT 2952 Query 227 TGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGAT 286 ||||| |||||| ||| |||||||||||||| | |||||||| | |||| Sbjct 2953 TGAAGCGACGGTAAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAACTGAGGGGAT 3012 Query 287 GACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 || | | ||||||||||||||||||||||||||| | |||||| || Sbjct 3013 GAGTTGTGGGTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGT 3060 >seq2584 Length=1774 Score = 105 bits (116), Expect = 1e-20 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAG 252 ||| ||||||| |||||||| ||| ||||||||||||| |||||| | | ||||| Sbjct 1649 GACCCGAAACCAAGTGATCTAGCCATGAGCAGGTTGAAGGTAAGGTAACACTTACTGGAG 1708 Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCA 312 ||||||||| | | |||| || || |||||||| | || |||||||||||||||| Sbjct 1709 GACCGAACCCGCATCTGTTGCAATAGATTGGGATGACTTGTGGCTAGGGGTGAAAGGCCA 1768 Query 313 ATCAAA 318 |||||| Sbjct 1769 ATCAAA 1774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972663759360