Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq1368 131 1e-28 seq3 109 4e-22 seq217 105 5e-21 seq216 91.5 1e-16 seq1992 80.6 2e-13 >seq1368 Length=2069 Score = 131 bits (144), Expect = 1e-28 Identities = 105/129 (81%), Gaps = 8/129 (6%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||||| | |||||||||||||||| Sbjct 550 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAATCCTACCGTGGTAAGCGCCCTCC 609 Query 78 --------CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGG 129 ||||||||||||||||||| | ||||| |||||||||||||||||| Sbjct 610 TTNNNNNNNNNCGGTTAAGCTACCTACTTCTGGTAAAACCCGCTCCCATGGTGTGACGGG 669 Query 130 CGGTGTGTA 138 ||||||||| Sbjct 670 CGGTGTGTA 678 >seq3 Length=3814 Score = 109 bits (120), Expect = 4e-22 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||||||||||||| ||||||| || || Sbjct 83 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACACCGTGGTAACCGTCC 24 Query 75 TCCCGAAGGTTAAGCTACCTACT 97 |||||||||||| ||| ||||| Sbjct 23 TCCCGAAGGTTAGACTAGCTACT 1 >seq217 Length=468 Score = 105 bits (116), Expect = 5e-21 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||||||||||||| ||||||| || || Sbjct 83 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACACCGTGGTAACCGTCC 24 Query 75 TCCCGAAGGTTAAGCTACCTACT 97 ||||||||||| ||| ||||| Sbjct 23 CCCCGAAGGTTAGACTAGCTACT 1 >seq216 Length=1692 Score = 91.5 bits (100), Expect = 1e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 76 CCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGT 135 ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1692 CCCGAAGGTTAGACTAGCTACTTCTGGTGCAACCCACTCCCATGGTGTGACGGGCGGTGT 1633 Query 136 GTA 138 ||| Sbjct 1632 GTA 1630 >seq1992 Length=451 Score = 80.6 bits (88), Expect = 2e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||||| | ||||||| |||||||| Sbjct 74 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAATCCTACCGTGGTAAACGCCCTCC 15 Query 78 CGAAGGTTAAGCTA 91 |||||||||| Sbjct 14 TTGCGGTTAAGCTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345554623800