Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1011 154 6e-35 seq931 154 6e-35 seq8643 141 4e-31 seq133 140 1e-30 >seq1011 Length=1610 Score = 154 bits (170), Expect = 6e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||||||||| ||| ||||||||| Sbjct 101 AGAGCGTATGCGTTGAGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGCCAGA 160 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || | |||||||| ||||||||||||||||| | |||||| Sbjct 161 GGAAACTCTGGTGGAAGTCCGAATCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGT 220 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 221 ATAGGGGCGA 230 >seq931 Length=1124 Score = 154 bits (170), Expect = 6e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||||||||| ||| ||||||||| Sbjct 144 AGAGCGTATGCGTTGAGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGCCAGA 85 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || | |||||||| ||||||||||||||||| | |||||| Sbjct 84 GGAAACTCTGGTGGAAGTCCGAATCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGT 25 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 24 ATAGGGGCGA 15 Score = 116 bits (128), Expect = 2e-23 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||||||| || ||||| | || || |||||| ||| |||| |||||| Sbjct 885 GAGTCGGGTTGTTTGGAAACGCAGCCCAAAGAAGGTGGTAAACTTCACCTAAGACTAAAT 826 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || |||||||| ||||||| |||| ||||| |||||||||||||| | Sbjct 825 ATCACTACGAATCCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTTTGAAG 766 Query 160 AGAGAGTTAAAAAGCACGTGAAAT 183 ||||||||||| |||||||||||| Sbjct 765 AGAGAGTTAAAGAGCACGTGAAAT 742 Score = 78.8 bits (86), Expect = 4e-12 Identities = 69/85 (81%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||| |||| | || |||||| ||||||| | | Sbjct 327 CGACCCGTCTTGAAACACGGACCAAGGAGTTTAACGTATACGCGAGTCATTGGGTGATAA 268 Query 464 AACCCGTGCGCGTAATGAAAGTGAA 488 |||| ||||||||||||| || Sbjct 267 AACCTAAAGGCGTAATGAAAGTAAA 243 >seq8643 Length=348 Score = 141 bits (156), Expect = 4e-31 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||| ||| |||||| | | ||||||||||| ||||||||||| | ||| | | Sbjct 150 GGATTCGAGGTAGAGCACATAAAATAGGACCCGAAAGGTGGTGAACTATACTTGAGGAAG 209 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| ||||||||||||||||||| | |||| | ||| ||||||||||| |||| Sbjct 210 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTTGTAGCGATACTGACGTGCAAATCGTTCGT 269 Query 663 CAAATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||| Sbjct 270 CTAATTTGGGTATAGGGGCGA 290 >seq133 Length=18310 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||| |||||||||||||||| | || |||| ||| |||||||||| |||| Sbjct 6405 GGACCCGAAAGAGTGTGAACTATGCCTGAAGAAGGCGAAGTCAGGGGAAACTCTGATGGA 6346 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | |||| | ||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 6345 GGCTTGTAGCGATACTGACGTGCAAATCGTTCGTCTAATTTGGGTATAGGGGCGA 6291 Score = 82.4 bits (90), Expect = 3e-13 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||| | |||||| | |||| ||| || ||| | ||| ||| || || | Sbjct 7171 TTCTACGAGTAGGAATGTTTGAAATTGCAT-TCTGAAAGGGTGATAAGATTCATCCAAGG 7113 Query 94 CTAAATATTGGCCAG-AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| | || ||||||||||| ||||||| |||| ||||| || |||| || Sbjct 7112 CTAAATATAAGTTAGGAGACCGATAGCATACAAGTACTGTGAAGGAAAGGTGCAAAGAAC 7053 Query 153 TTTGGAAAGAGAGTTAAAA 171 |||| ||| || ||||||| Sbjct 7052 TTTGAAAAAAGGGTTAAAA 7034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079699592750