Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq11019 170 2e-40 seq1400 140 3e-31 seq158 102 8e-20 seq3 98.7 9e-19 seq2584 89.7 5e-16 >seq11019 Length=406 Score = 170 bits (188), Expect = 2e-40 Identities = 142/173 (82%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||| Sbjct 210 GGGGGATGCCTAGGCTCTCAGAGGCGATGAAAGGCGTGATAAGCTGCGAAAAGCTGCGGG 269 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || |||||| || ||||||||| ||||| | ||||||||||||||| ||| ||| ||| Sbjct 270 GACGGGCACACACCGATTGATCCGCAGATACCTGAATGGGGCAACCCGTTATGTTGAAGA 329 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| || | || |||| | ||| ||| | ||||||||||||||||||| Sbjct 330 CATAACACACCGATAGG---TGGGCAAACCCGCTGAACTGAAACATCTAAGTA 379 >seq1400 Length=5517 Score = 140 bits (154), Expect = 3e-31 Identities = 139/179 (78%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| || | |||||||| ||||||| ||||||| ||||||||||||||||||||| |||| Sbjct 2407 GCACACAGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGC 2466 Query 62 TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATAT 121 | |||||||| ||| ||| ||||| ||||| |||| ||||||||||| |||| | | Sbjct 2467 TCCGGGGATTAGCAAATATGAATTAATCCGGAGATTTCCGAATGGGGAAACCTGGCTAGT 2526 Query 122 TGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| || || | | | || || ||| || ||||||||||||||||||| Sbjct 2527 TGAAGACTAGTCGTA---CAAAG---TACGCAAACCTGCTGAACTGAAACATCTAAGTA 2579 >seq158 Length=3153 Score = 102 bits (112), Expect = 8e-20 Identities = 137/187 (73%), Gaps = 9/187 (5%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||| || ||||| |||| Sbjct 3120 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 3061 Query 62 TACGGGGATTG-GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | |||||| || ||| | || |||||||| |||| ||||||||||||||||| | Sbjct 3060 TGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGCAACCCACCCTT 3001 Query 121 TTGGAGATATATCATAACG-----CTAGG--CGTTAGGCGAACGTGGGGAACTGAAACAT 173 || | | ||| |||| | |||| | ||||||||| || |||||||||||| Sbjct 3000 TTAG-GGTATTGCATACTGAATACATAGGTATGCAAGGCGAACGCGGCGAACTGAAACAT 2942 Query 174 CTAAGTA 180 ||||||| Sbjct 2941 CTAAGTA 2935 >seq3 Length=3814 Score = 98.7 bits (108), Expect = 9e-19 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || ||||||||||| Sbjct 624 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 683 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| Sbjct 684 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 737 >seq2584 Length=1774 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| ||||||| |||| |||| Sbjct 827 GGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCGTCGGG 886 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || |||| |||||||| ||| ||||||||||| ||||| Sbjct 887 GAGGTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476735310905