Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1368 600 3e-169 seq216 421 2e-115 seq1400 260 4e-67 seq4315 253 5e-65 seq1401 219 1e-54 seq2 93.3 1e-16 >seq1368 Length=2069 Score = 600 bits (664), Expect = 3e-169 Identities = 377/407 (93%), Gaps = 0/407 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1580 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 1521 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||| Sbjct 1520 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAGTCTGATGT 1461 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||||||| ||||||||||||||||| | ||||||| | ||||| | || |||| Sbjct 1460 GAAATCCCCGGGCTCAACCTGGGAATTGCATTGGAGACTGCAAGGCTAGAATCTGGCAGA 1401 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1400 GGGGGGTAGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCGATGG 1341 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| Sbjct 1340 CGAAGGCAGCCCCCTGGGTCAAGATTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 1281 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| || ||||||||| ||| || | | Sbjct 1280 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCTACTAGTTGTCGGGTCTTAATT 1221 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||||||||| |||||||||||||||| ||||||||||||| ||| Sbjct 1220 GACTTGGTAACGCAGCTAACGCGTGAAGTAGACCGCCTGGGGAGTAC 1174 >seq216 Length=1692 Score = 421 bits (466), Expect = 2e-115 Identities = 337/402 (84%), Gaps = 3/402 (1%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 729 AGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTT 788 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||||||||||||||||||| ||| ||| |||| |||| | |||||||||| Sbjct 789 AATCGGAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTCGTTAAGTTGGATGTGAAATCC 848 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAGAGGGGGG 188 ||||||| |||||||||| |||||| |||| |||| ||||||| || |||||| || Sbjct 849 CCGGGCTCAACCTGGGAACTGCATTCAAAACTG-ACGAGCTAGAGTATGGTAGAGGGTGG 907 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||||| | ||||||| ||||||||||||||||| | |||||||||| ||||||||| Sbjct 908 TGGAATTTCCTGTGTAGCGGTGAAATGCGTAGATATAGGAAGGAACACCAGTGGCGAAGG 967 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 | || ||||| | | |||||| || | | |||||||||||||||||||||||||||| Sbjct 968 CGACCACCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAG 1027 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTTACTTCCTT 367 |||||||||||||||||||| |||||||| |||||||| |||||| | || ||| Sbjct 1028 ATACCCTGGTAGTCCACGCCGTAAACGATGTCAACTAGCCGTTGGGAGCCTTGAGCTCTT 1087 Query 368 GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || ||||||||| | |||||||||||||||||| ||| Sbjct 1088 AGTGGCGCAGCTAACGCATTAAGTTGACCGCCTGGGGAGTAC 1129 >seq1400 Length=5517 Score = 260 bits (288), Expect = 4e-67 Identities = 307/412 (75%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | ||||||| | ||||||||| |||||||||||||||||||||||| ||| | | Sbjct 793 TACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 852 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||| ||| |||| ||||| ||||| |||||| | |||| |||| || Sbjct 853 AAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCTTATTAAGTCAGGGGT 912 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAG 181 |||| | |||| |||| | | ||| ||| |||| | || || || | || Sbjct 913 GAAAGACGGTGGCTCAACCATCGCAGTGCCCTTGATACTG-ATGAGCTTGAATACACTAG 971 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| || ||||| || ||||| ||||||||| ||||||||| ||||||| || Sbjct 972 AGGTAGGCGGAATGTGACAAGTAGCGGTGAAATGCATAGATATGTCACAGAACACCGATT 1031 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||||||| || | | | ||||||| | ||||||||||||||||| |||||| Sbjct 1032 GCGAAGGCAGCTTACTATGGTGTTATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACA 1091 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC 361 |||||||||||||||||||||||||||||||||||| ||| | |||| | ||| ||| Sbjct 1092 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAATACTCGCTGTTAGCGATATAC 1151 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATACTCCC 413 || | | ||| || |||| |||| || |||||||| ||| ||| Sbjct 1152 --AGTTAGCGGCTAAGCGAAAGCGTTAAGTATTCCACCTGGGGAGTACGCCC 1201 >seq4315 Length=368 Score = 253 bits (280), Expect = 5e-65 Identities = 227/285 (80%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| |||| |||||||||| |||||||||||||||||||||||| |||| || |||||| Sbjct 84 AGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTT 143 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||| ||||||||||||||||| || |||||| |||| |||| ||||||||| Sbjct 144 GTTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGACTATTAAGTCAGGGGTGAAATCC 203 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 | ||||| |||| |||| ||| |||| |||| | || |||| | ||||| | || Sbjct 204 CGGGGCTCAACCCCGGAACTGCCTTTGATACTGGTAGTCTTGAGTTCGAGAGAGGTGAGT 263 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||||| |||||| ||||||| ||||||||| |||||||||||| |||||||||| Sbjct 264 GGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGC 323 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGA 294 || | |||| | ||||||||| | | |||||||||||||| Sbjct 324 GGCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGA 368 >seq1401 Length=5644 Score = 219 bits (242), Expect = 1e-54 Identities = 242/320 (76%), Gaps = 15/320 (5%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||||||||||||||||||||| ||||||||||||||| Sbjct 764 TACCTGCAGAAGAAGCACCGGCTAACTACGTGCCNN---------TAATACGTAGGGTGC 814 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAA-GACAGGTG 121 ||||||| |||||||||||||||||||| || || |||||||| ||| | | || Sbjct 815 AAGCGTTGTCCGGAATTACTGGGCGTAAAGAGTTCGTAGGCGGTT-TGTCGCGTCGTTTG 873 Query 122 TGAAATCCCCGGGCTTAAC--CTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTC 179 ||||| || ||| ||| |||| ||||| | || | |||| |||| | Sbjct 874 TGAAAACCAGCAGCTCAACTGCTGGC--TTGCAGGCGATACGGGCAGACTTGAGTACTGC 931 Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239 || || | ||||||||| ||||||| |||||||||| |||||| ||||||||||| Sbjct 932 AGGGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGG 991 Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299 |||||||||| | | ||||| ||||||||| | | ||||||||||||| ||| || Sbjct 992 TGGCGAAGGCGGGTCTCTGGGCAGTAACTGACGCTGAGGAACGAAAGCGTGGGTAGCGAA 1051 Query 300 CAGGATTAGATACCCTGGTA 319 |||||||||||||||||||| Sbjct 1052 CAGGATTAGATACCCTGGTA 1071 >seq2 Length=66720 Score = 93.3 bits (102), Expect = 1e-16 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 9 AAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGT 68 ||||| |||| |||||||| | |||||||||||||||||||| ||| |||| ||||| | Sbjct 47549 AAGAAGAAGCCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAAAACGGAGGGGGCAAGTAT 47608 Query 69 TAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 || ||| || | ||||||||||| || | |||| ||| Sbjct 47609 TATTCGTAAGGATTGGGCGTAAAGGGTATGTAGGCTGTT 47647 Score = 80.6 bits (88), Expect = 7e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 266 ACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 325 ||||||||| | | |||||||| | ||||||||||||||||||| |||||||||||| | Sbjct 47807 ACTGACGCTGAGGTACGAAAGCATAGGGAGCAAACAGGATTAGAGACCCTGGTAGTCTAT 47866 Query 326 GCCCTAAACGAT 337 || ||||| || Sbjct 47867 GCAGTAAACTAT 47878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289419391520