Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1401 293 3e-77 seq3 183 4e-44 seq1400 138 2e-30 seq158 116 5e-24 seq2 80.6 4e-13 >seq1401 Length=5644 Score = 293 bits (324), Expect = 3e-77 Identities = 221/255 (87%), Gaps = 10/255 (4%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 4233 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTAC-GACTTCGCAC 4175 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||||||||||||||||||||| | || |||||||| || | |||||||| Sbjct 4174 GGACCTGTGTTTTTAGTAAACAGTCGCTTCTCACTGGTCTCTGCGGCCCCACCCAGCTCA 4115 Query 121 ------ACACGTCGTTCACCAG-CAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173 | | ||||| |||||| ||| ||| ||||||||||||||||||||||| ||||| Sbjct 4114 GACAGTAAATGTCGT-CACCAGACAG-GGCCCCCCTTCTCCCGAAGTTACGGGGGCATTT 4057 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 |||||| ||||||||||| |||| | ||| ||||||||||||||||||||||||||||| Sbjct 4056 TGCCGAGTTCCTTAACCATAGTTATCTCGATCGCCTTAGTATTCTCTACCTGACCACCTG 3997 Query 234 TGTCGGTTTACGGTA 248 ||||||||| |||| Sbjct 3996 TGTCGGTTTGGGGTA 3982 >seq3 Length=3814 Score = 183 bits (202), Expect = 4e-44 Identities = 192/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 2451 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 2393 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| | || | ||| ||||| || |||| | Sbjct 2392 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTAC 2333 Query 122 ----CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || ||| |||||| || ||| | ||||||||||||||||||| ||||||||||| Sbjct 2332 GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATTTTGCC 2273 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| ||| ||||| | | | |||||| |||||||||||| |||||||||||| Sbjct 2272 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCACCTGTGTC 2213 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 2212 GGTTTGGGGTA 2202 >seq1400 Length=5517 Score = 138 bits (152), Expect = 2e-30 Identities = 180/248 (73%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||| | | || ||| Sbjct 4247 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCATCTTTCGATTTT-GCAA 4189 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| ||||||||||| | || ||| ||||| ||| | Sbjct 4188 AGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGCG----------GCTGA 4139 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | |||||| ||||||||||||||||||| ||||||||||||||| Sbjct 4138 TA---TTGCT-ACCAGCG------CCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAG 4089 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| ||||| ||| | |||||| ||||||| || | |||||||||||| Sbjct 4088 TTCCTTAGCCATGATTCACTCGAGCACCTTAGAATTCTCTTCCCGGATACCTGTGTCGGT 4029 Query 241 TTACGGTA 248 || ||||| Sbjct 4028 TTGCGGTA 4021 >seq158 Length=3153 Score = 116 bits (128), Expect = 5e-24 Identities = 178/249 (71%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 1309 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 1367 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC--CACCAGCTCAACAC 124 ||||||||| ||||||||||| || | || ||| ||| |||| |||| Sbjct 1368 GTGTTTTTATTAAACAGTCGCAGCCACCAGTTTATTGCAACCCTTTCACC--CTCATGGA 1425 Query 125 GTCGTTCA--CCAGCA---GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || || | ||| | ||| |||| |||||||||||||| ||| |||||||| Sbjct 1426 GTAAACCAATCAAGCTACCGGGGCGTACCTTTTCCCGAAGTTACGGTACCAATTTGCCGA 1485 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| || ||||| | | | |||||||| || ||| | | ||||||||||||| Sbjct 1486 GTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCGG 1545 Query 240 TTTACGGTA 248 ||| ||||| Sbjct 1546 TTTGCGGTA 1554 >seq2 Length=66720 Score = 80.6 bits (88), Expect = 4e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 ||| ||||||||||||||||||| | ||||||||||| |||||| | || ||||| | Sbjct 62302 CACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTTCAATACTATTCACTC- 62244 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 || | ||| ||||||||| | ||| ||||||||||| Sbjct 62243 TACACTTTAATATTCTCTATCAATTAACCGGTGTCGGTTTA 62203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694305788365