Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq1400 138 1e-30 seq1401 89.7 5e-16 seq3 86.0 7e-15 seq158 78.8 1e-12 >seq1400 Length=5517 Score = 138 bits (152), Expect = 1e-30 Identities = 138/175 (79%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| ||| |||| || || |||||| ||| |||||||||| || || Sbjct 4024 CGCAAACCGACACAGGTATCCGGGAAGAGAATTCTAAGGTGCTCGAGTGAATCATGGCTA 4083 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || |||||||||||||||| ||||| | || || ||| | Sbjct 4084 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGA-GAAGGGGCGCT-GGTAGCAATATCA 4141 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||| ||| |||||| ||||||||||||||||||| |||| ||| || Sbjct 4142 -GCCGCAGTGAAAAGGCCCAGGCGACTGTTTAACAAAAACACATGGCTTTGCAAA 4195 >seq1401 Length=5644 Score = 89.7 bits (98), Expect = 5e-16 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||| ||| || ||||||||||| | ||| || | ||||||| Sbjct 3987 CAAACCGACACAGGTGGTCAGGTAGAGAATACTAAGGCGATCGAGATAACTATGGTTAAG 4046 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122 ||||| |||||| || ||| |||||||||||| || ||| Sbjct 4047 GAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGG 4085 >seq3 Length=3814 Score = 86.0 bits (94), Expect = 7e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || |||| |||||||||||| ||| ||| ||| Sbjct 2207 CAAACCGACACAGGTGGTTGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 2266 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 2267 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 2301 >seq158 Length=3153 Score = 78.8 bits (86), Expect = 1e-12 Identities = 78/100 (78%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | || | ||| ||| |||||||||||||| ||| || | Sbjct 1551 CGCAAACCGACACAGGTGGGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCGGGAGA 1492 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGG 121 ||||||| |||||| || | |||||||||||| ||||| Sbjct 1491 AGGAACTCGGCAAATTGGTACCGTAACTTCGGGA-AAAGG 1453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531127930270