Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3 755 0.0 seq158 434 3e-119 seq1400 284 3e-74 seq1401 275 2e-71 seq5126 82.4 2e-13 seq2 73.4 1e-10 >seq3 Length=3814 Score = 755 bits (836), Expect = 0.0 Identities = 423/426 (99%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2645 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 2586 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2585 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 2526 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2525 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 2466 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2465 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 2406 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2405 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 2346 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2345 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 2286 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2285 GTGCCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 2226 Query 421 AACCAC 426 |||||| Sbjct 2225 AACCAC 2220 >seq158 Length=3153 Score = 434 bits (480), Expect = 3e-119 Identities = 348/417 (83%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||| ||||| ||||||| ||| |||||||||||| |||||||| Sbjct 1119 CGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGT 1178 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1179 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1238 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| || Sbjct 1239 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 1293 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1294 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 1349 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| || | | | | ||| Sbjct 1350 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCAGTTTATTGCAACC 1409 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACC--GGCGCACCTTCTCCCGAAGTTA 358 || | |||| || | ||| || ||| |||| ||||| ||||||||||| Sbjct 1410 CTTTCACCCTCATGGAGTAAACCAATCAAGCT-ACCGGGGCGTACCTTTTCCCGAAGTTA 1468 Query 359 CGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||| || |||||| ||||||||| |||||||||||||||||||||| | || ||| Sbjct 1469 CGGTACCAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTC 1525 >seq1400 Length=5517 Score = 284 bits (314), Expect = 3e-74 Identities = 318/424 (75%), Gaps = 32/424 (8%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| ||| | || ||||||| | || ||||||||| ||| ||| || |||||||| Sbjct 4441 GCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGAG-CTCATGGCTGAGACAGC 4383 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4382 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4323 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||||||||||| | |||||| ||| Sbjct 4322 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAATGCTTCGGTTTA 4263 Query 181 --GCTAAC--CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCC 236 ||||| ||| || |||||||||| |||||||||||| |||| || ||||| || Sbjct 4262 ACCCTAACATCCCCTC--TTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCA 4205 Query 237 ACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296 |||||| |||||| || ||||||||| ||||||||||| ||||| | || | Sbjct 4204 TCTTTCGATTTTGCAAAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGC 4145 Query 297 GACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGT 356 | | ||| || | ||| |||| |||||||||||||| Sbjct 4144 GGC-----TGATATTGC-------------------TACCAGCGCCCCTTCTCCCGAAGT 4109 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 ||| | ||| ||||||| |||||||| || ||| ||| ||| |||| | ||||||| Sbjct 4108 TACAGGGCCATTTTGCCGAGTTCCTTAGCCATGATTCACTCGAGCACCTTAGAATTCTCT 4049 Query 417 ACCC 420 ||| Sbjct 4048 TCCC 4045 >seq1401 Length=5644 Score = 275 bits (304), Expect = 2e-71 Identities = 314/421 (75%), Gaps = 7/421 (2%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| || | | ||||||| | |||||| ||| |||||||| | ||||| Sbjct 4420 GCATCTTTACTCGTAATGCAATTTCGCCGAGTCTACGGTTGAGACAGCTGAGAAGTCGTT 4361 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4360 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 4301 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC------GTTAGCTAAC 186 | ||||| ||||||||||| ||||||| || |||||||| | ||||| Sbjct 4300 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCTCAGCTTCGCTCCCGAAGGAACTAAC 4241 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | |||||||||| ||||||||||||||||| || ||||| || ||| || | Sbjct 4240 CGGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTACGACT 4181 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||| | ||||||||||| ||||||||||| | ||||| ||| || || Sbjct 4180 TCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCTCACTGGTCTCTGCGGCCCCACCC 4121 Query 307 AGCTTACGGAGCAAGT-CCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 365 |||| | || || | | ||||| ||| | ||||||||||||||||||| | | Sbjct 4120 AGCTCAGACAGTAAATGTCGTCACCAGACAGGGCCCCCCTTCTCCCGAAGTTACGGGGGC 4061 Query 366 TTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCA 425 ||||||| |||||||| || |||| |||| | |||||| |||||||||||| |||| Sbjct 4060 ATTTTGCCGAGTTCCTTAACCATAGTTATCTCGATCGCCTTAGTATTCTCTACCTGACCA 4001 Query 426 C 426 | Sbjct 4000 C 4000 >seq5126 Length=585 Score = 82.4 bits (90), Expect = 2e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | ||||| Sbjct 513 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTT 572 Query 73 ACGCCATTCGTGC 85 ||||||||||||| Sbjct 573 ACGCCATTCGTGC 585 >seq2 Length=66720 Score = 73.4 bits (80), Expect = 1e-10 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||| |||| ||||||||| | ||||| Sbjct 63710 GCATCTTCACGGAAAATTCAACTTCATTGAGATAGTACTGGAGACAGTAGGGAAGTCGTT 63651 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 || |||||| |||| |||| || |||| ||||||||||||||||| Sbjct 63650 ACACCATTCATGCACGTCGAAAATTACTCGACAAGGAATTTCGCT 63606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260623424960