Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1400 385 1e-104 seq1401 336 5e-90 seq3 268 2e-69 seq158 215 1e-53 seq2 156 9e-36 >seq1400 Length=5517 Score = 385 bits (426), Expect = 1e-104 Identities = 301/356 (85%), Gaps = 5/356 (1%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 |||||||| |||||||||||| |||||||||||||| || | |||||||| ||||| Sbjct 4436 TACCCGGCGTCTTCACCGGGACCACAATTTCACCGAGCTCATGGCTGAGACAGCGCCCAG 4377 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4376 ATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 4317 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT--GCTCTA 178 |||||||||||||||||||||||||||||||||| |||| ||||||| || | ||| Sbjct 4316 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAATGCTTCGGTTTAACCCTA 4257 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 ||| || |||||||||||||||||||||||| ||||| | ||||| || |||| ||| Sbjct 4256 ACATCCCCTCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACTTCATCTTTCGA 4197 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 || ||| | | |||||||||| ||||||||||| ||||||| ||| |||||| ||| Sbjct 4196 TTTTGCAAAGCCATGTGTTTTTGTTAAACAGTCGCCTGGGCCTTTTCACTGCGG-CTGAT 4138 Query 299 ATAG--ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || | || || ||||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 4137 ATTGCTACCAGCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAGTTCCTTA 4082 >seq1401 Length=5644 Score = 336 bits (372), Expect = 5e-90 Identities = 306/390 (78%), Gaps = 32/390 (8%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | | | ||||||| ||||||||| |||||||||| || ||||| Sbjct 4420 GCATCTTTACTCGTAATGCAATTTCGCCGAGTCTACGGTTGAGACAGCTGAGAAGTCGTT 4361 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4360 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 4301 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT------CGATTGCTCTAAC 180 ||||||| ||||||||||||||||||||| ||| | |||| ||| | ||||| Sbjct 4300 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCTCAGCTTCGCTCCCGAAGGAACTAAC 4241 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| |||||||||||||||||||||||||||||| | ||||||||||||| ||||| Sbjct 4240 CGGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTACGACT 4181 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------ 294 | ||| |||||||||||| |||||||||||||| || ||||||||||| Sbjct 4180 TCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCTCACTGGTCTCTGCGGCCCCACCC 4121 Query 295 ---------------TGTCAT----AGACA-GGCACCCCTTCTCCCTAAGTTACGGGGTC 334 |||| | ||||| ||| ||||||||||| ||||||||||| | Sbjct 4120 AGCTCAGACAGTAAATGTCGTCACCAGACAGGGCCCCCCTTCTCCCGAAGTTACGGGGGC 4061 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||||||||| |||||| || Sbjct 4060 ATTTTGCCGAGTTCCTTAACCATAGTTATC 4031 >seq3 Length=3814 Score = 268 bits (296), Expect = 2e-69 Identities = 291/390 (75%), Gaps = 27/390 (7%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| ||||||||| |||||| || ||||||| ||| Sbjct 2639 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 2580 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2579 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 2520 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | | |||||| | ||||| Sbjct 2519 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 2460 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||| ||||||||||||||||| ||||||| || ||| || | Sbjct 2459 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 2400 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | ||||| |||||||||| ||||||||||| ||||| | ||| || || | ||| Sbjct 2399 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCAT 2341 Query 301 -AG-------------------------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 || || ||| | ||||||||| ||||||||| | | Sbjct 2340 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 2281 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||| |||||||| || ||||||| Sbjct 2280 ATTTTGCCTAGTTCCTTCACCCGAGTTCTC 2251 >seq158 Length=3153 Score = 215 bits (238), Expect = 1e-53 Identities = 209/267 (78%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | ||||||||| |||||| Sbjct 1131 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTGTGGCCATCGTT 1190 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1250 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 1251 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 1301 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 1302 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 1361 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 1362 AGTGCTGTGTTTTTATTAAACAGTCGC 1388 >seq2 Length=66720 Score = 156 bits (172), Expect = 9e-36 Identities = 186/248 (75%), Gaps = 16/248 (6%) Strand=Plus/Minus Query 112 ACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT 171 ||||||||||||| || ||||| |||||||||||||| | ||| | |||| |||| Sbjct 62486 ACCTTAGGACCGTCATGGTTACAGCCGCCGTTTACTGAGACTTCAATTCAACGCTT---- 62431 Query 172 TGCTCTAACAGATCCCCTTAACCTTC-CAGCACCGGGCAGGCGTCAGCTCCTATACATCG 230 || ||| ||| || | ||| |||||||||||||| ||| | |||||||||| Sbjct 62430 -GC----ACATCTCCTTTTCATCTTAACAGCACCGGGCAGGTATCAACGCCTATACATCA 62376 Query 231 TCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGC 290 | || | | || ||||| ||||||||||| |||||||||||| ||| || ||| Sbjct 62375 TATTACTATTTTGCAGACGCCTGTGTTTTTATTAAACAGTCGCTACCCCCTCTTTTCTAT 62316 Query 291 GGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCT 350 | || | || || ||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct 62315 GATCT-TTTTA---AGACACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCT 62260 Query 351 TAACAATA 358 | ||||| Sbjct 62259 T--CAATA 62254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062251210880