Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq216 544 2e-152 seq1368 470 4e-130 seq1401 443 6e-122 seq1400 417 2e-114 seq2 150 5e-34 >seq216 Length=1692 Score = 544 bits (602), Expect = 2e-152 Identities = 423/500 (85%), Gaps = 8/500 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1127 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1186 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||||||||||||||||||||||||| |||||||||| ||| | || Sbjct 1187 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGCCTTGACATCCAATGAACTTTC 1246 Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||||||| ||| |||||||| ||| | |||||||| ||||||| ||||||| Sbjct 1247 TAGAGATAGATTGGTG---CCTTCGGGA-ACATTGAGACAGGTGCTGCATGGCTGTCGTC 1302 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 1303 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGTAACGAGCGCAACCCTTGTCCTTAGTT 1362 Query 239 GCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGG 296 ||| || ||| | ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1363 ACCAGCACGTTATGGTGGGCACTCTAAGGAGACTGCCGGTGACAAACCGGAGGAAGGTGG 1422 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| |||||||| |||||||| |||||| | |||||||||||||||||||||||| | Sbjct 1423 GGATGACGTCAAGTCATCATGGCCCTTACGGCCTGGGCTACACACGTGCTACAATGGTCG 1482 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| |||| || || ||||||||| ||| ||||||| ||| | || ||| ||| Sbjct 1483 GTACAGAGGGTTGCCAAGCCGCGAGGTGGAGCTAATCCCAGAAAACCGATCGTAGTCCGG 1542 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 || | |||||||||||||||| ||||| ||||||||||||||||| ||||| ||| Sbjct 1543 ATCGCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAATCGCGAATCAGAATG 1602 Query 477 CTACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 1603 TCGCGGTGAATACGTTCCCG 1622 >seq1368 Length=2069 Score = 470 bits (520), Expect = 4e-130 Identities = 405/497 (81%), Gaps = 7/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||||||||||||||||||||| || Sbjct 1176 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 1117 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||| ||||||||| |||||||||| ||||||||| | |||||||| || || | Sbjct 1116 GTGGATTAATTCGATGCAACGCGAAAAACCTTACCTACCCTTGACATGGCTGGAATCCCC 1057 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG-ACAGGTGATGCATGGTTGTCGTCA 179 |||||| | || | | | | | || ||| ||||||| ||||||| |||||||| Sbjct 1056 GAGAGATTGGGGAGTGCTCGAAAGAGAACC-AGTACACAGGTGCTGCATGGCTGTCGTCA 998 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 997 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGTTG 938 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 | | | ||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 937 CTACGA--AAG---GGCACTCTAATGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 883 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| || ||||| |||||||| | ||||| ||||||| |||||||| ||| Sbjct 882 TGACGTCAAGTCCTCATGGCCCTTATGGGTAGGGCTTCACACGTCATACAATGGTACATA 823 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 || || || || || |||||||| ||| |||| || ||||| || ||| |||||| Sbjct 822 CAGAGCGCCGCCAACCCGCGAGGGGGAGCTAATCGCAGAAAGTGTATCGTAGTCCGGATT 763 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 |||||||||||||||||| |||||| |||||||||||||||||| |||||||||| Sbjct 762 GTAGTCTGCAACTCGACTGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGTCG 703 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 702 CGGTGAATACGTTCCCG 686 >seq1401 Length=5644 Score = 443 bits (490), Expect = 6e-122 Identities = 392/476 (82%), Gaps = 13/476 (3%) Strand=Plus/Plus Query 27 GAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAG 86 |||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||| Sbjct 1176 GAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGTGGATTAATTCGATGCAACGCGAAG 1235 Query 87 AACCTTACCAAATCTTGACATCCTCTG-ACCCCTCTAGAGATAGAGGTTTCCCCTTCGGG 145 ||||||||| ||||||| | | | || |||||| | || |||||| | Sbjct 1236 AACCTTACCTGGGTTTGACATATACCGGAAAGCTGCAGAGAT-GTGGCC-CCCCTT--GT 1291 Query 146 GGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAA 205 || | | | ||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1292 GGTCGGTAT-ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAA 1350 Query 206 GTCCCGCAACGAGCGCAACCCTTAAGCTTA-GTTGCCATCA--TTAAGTTGGGCACTC-T 261 ||||||||||||||||||||| || |||| ||||||| || ||| | |||| |||| | Sbjct 1351 GTCCCGCAACGAGCGCAACCCCTAT-CTTATGTTGCCAGCACGTTATGGTGGGGACTCGT 1409 Query 262 AAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCC 321 ||| ||||||||| | ||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1410 AAGA-GACTGCCGGGGTCAACTCGGAGGAAGGTGGGGACGACGTCAAGTCATCATGCCCC 1468 Query 322 TTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAG 381 ||||| ||||| ||||| ||||||||||| || |||| ||||| |||| |||| ||| Sbjct 1469 TTATGTCCAGGGCTTCACACATGCTACAATGGCCAGTACAGAGGGCTGCGAGACCGTGAG 1528 Query 382 GTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATAT 441 || ||| |||||| ||||| || ||||||||||||| | |||||||||||||| | Sbjct 1529 GTGGAGCGAATCCCTTAAAGCTGGTCTCAGTTCGGATCGGGGTCTGCAACTCGACCCCGT 1588 Query 442 GAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTGAATACGTTCCCG 496 |||| ||| ||||||||||||| |||||||| | ||| ||||||||||||||||| Sbjct 1589 GAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATACGTTCCCG 1644 >seq1400 Length=5517 Score = 417 bits (462), Expect = 2e-114 Identities = 399/502 (79%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1195 TACGCCCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1254 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||| |||||||||| ||||| | ||| || Sbjct 1255 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAAAGTTAGTGAATGATC 1314 Query 121 TAGAGATAGAGGTTTCCCCT-TCGGGGGACAGAGTGAC-AGGTGATGCATGGTTGTCGTC 178 |||||||||| | | || ||| | || ||||| ||||||| ||||||| Sbjct 1315 TAGAGATAGATCAGTGAGCAATC-----ACAC-GAAACTAGGTGCTGCATGGCTGTCGTC 1368 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||| |||||| |||||||||||||||||||||||||||||||| || | |||||| Sbjct 1369 AGCTCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATGTTTAGTT 1428 Query 239 GCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTG 295 |||| || ||||| |||| ||||||| ||||||| ||| ||||| | |||||||| | Sbjct 1429 GCCAGCACGTTAAGGTGGGGACTCTAAACAGACTGCCTGTG-CAAACAGAGAGGAAGGAG 1487 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||||||||||||| |||||||| |||||| | |||||||||||||||||||||||| Sbjct 1488 GGGACGACGTCAAGTCATCATGGCCCTTACGTCCGGGGCTACACACGTGCTACAATGGAT 1547 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||| |||||||| | || | ||||| |||| || |||| ||| ||||||| Sbjct 1548 GGTACAGAGGGCAGCAAGCTGGCAACAGCAAGCGAATCTCAAAAAGCCATTCACAGTTCG 1607 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474 ||| | |||||||||||||| ||||| |||| ||||||||||||| |||||| | Sbjct 1608 GATAGAGGTCTGCAACTCGACCTCTTGAAGTTGGATTCGCTAGTAATCGCGTATCAGCAA 1667 Query 475 TGCTACGGTGAATACGTTCCCG 496 || ||||||||||||||||| Sbjct 1668 TGACGCGGTGAATACGTTCCCG 1689 >seq2 Length=66720 Score = 150 bits (166), Expect = 5e-34 Identities = 335/499 (67%), Gaps = 33/499 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||| || |||||||||||||||||||| | || ||||| ||||||||| Sbjct 47941 TACGATCGCAAGATTAAAACTCAAAGGAATTGACGGAGGTTTGCGCAAGCAGTGGAGCAT 48000 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG-----AC 115 || ||||||||||| ||| |||| || |||||| ||| ||| | | | Sbjct 48001 GTAGTTTAATTCGATATAACACGAAAAATCTTACCCGTCATTG-CATTGTGTATATAAAA 48059 Query 116 CCCTCTAGA-GATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGT 174 ||| || | ||||| | | | | ||||| | ||||||| ||| Sbjct 48060 ATTGAAAGAAGAAAAAGGTTCAATAAAATAAGCATAAA---ACAGGAGCTGCATGGCTGT 48116 Query 175 CGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTT 234 |||||| ||| | || || |||| |||||| ||| | ||| || || ||||| || Sbjct 48117 CGTCAGTTCGCGCTGTTAGGTGTTAGGTTAATTCCTTGAGCGAACGTAATCCTTATATTT 48176 Query 235 AGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG------GAG 288 |||| | | | | ||||| | | ||| | ||| || | | Sbjct 48177 AGTTACAA------------GAAATCTAAATAG-CTGAAAATAACA---CGTTTTATGTG 48220 Query 289 GAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTAC 348 |||| |||||| || ||||| || ||| || | || |||||||| | ||||||| Sbjct 48221 GAAGTTGGGGATGATGTCAAGTCGGTATGGCCTTCATAGGCGGGGCTACATATGTGCTAC 48280 Query 349 AATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCT 408 ||||| ||||||| || ||||||| | || | ||||||||| | ||||| ||| Sbjct 48281 AATGGGTTATACAAAAGGAAGCGAAAATGAAAGTTGGAGCAAATCCTA-AAAGTAACTCT 48339 Query 409 CAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGA 468 ||||| |||||| |||| ||||||| ||||| |||||| ||||||||||||||| Sbjct 48340 CAGTTTGGATTGGTTTCTGAAACTCGAAATCATGAAATTGGAATTGCTAGTAATCGTAGA 48399 Query 469 TCAGCATGCTACGGTGAAT 487 | || | ||| |||||||| Sbjct 48400 TTAGTACGCTTCGGTGAAT 48418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503789364800