Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq351 185 1e-44 seq133 149 1e-33 seq4335 77.0 5e-12 >seq351 Length=285 Score = 185 bits (204), Expect = 1e-44 Identities = 178/220 (81%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 44 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATT-GGCTGGAAGCCAATAG 102 ||||||||||||||||||||||||||||| || || ||| |||||||| | || Sbjct 1 ATCTAAGGGCATCACAGACCTGTTATTGC-TCTG--TTTCATGCGGCTGGAACACCGTAA 57 Query 103 -TCCCTCTAAGAAGCCA--GCCAC-CAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 | |||||| |||| | || || ||| ||| | || |||||||| |||||| Sbjct 58 ATTCCTCTAGGAAGTTATTGCTACACAATAATAAT-GAGCCAACTATTTAGTAGGTTAGA 116 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 117 GTCTCGCTCGTTATCGGAATAAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 176 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||| ||||| |||||||||||||||||||| Sbjct 177 ACCACCATCCACCAAATCATGAAAGAGCTATCAATCTGTC 216 >seq133 Length=18310 Score = 149 bits (164), Expect = 1e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 8887 CTATTTAGTAGGTCGAGGTCTCGTCCGTTATCGGAATTGACCAGACAAATCACTCCACCA 8946 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||||||| ||||||||| |||| | || | | |||||| Sbjct 8947 ACTAAGAACGACCATGCACCACCACTTATAGAATCATGAAAAATCTTTTAGTCTGTC 9003 Score = 93.3 bits (102), Expect = 7e-17 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||| ||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 8669 CATTGTAACGCGCGTGCAGCCCAAGGTATCTAAGGGCATCACAGACCTGTTATTGCCTCG 8728 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||||| || || | |||||||||||||||| Sbjct 8729 AACTTCCCCCCACTTGAGGTAGGTAGTCCCTCTAAGAAG 8767 >seq4335 Length=212 Score = 77.0 bits (84), Expect = 5e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 65 |||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 50 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796691895405