Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq133 329 6e-88 seq3 78.8 2e-12 >seq133 Length=18310 Score = 329 bits (364), Expect = 6e-88 Identities = 222/247 (90%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |||| Sbjct 4008 CAGGAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCTTGTTAG 4067 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 |||||||||||||||| ||| |||||||||||||| |||||| |||||||||||||| Sbjct 4068 AGGGTGAACAATCCAACACTTTGCGAATTCTGCTTCGCAATGATAAGAAGAGCCGACATC 4127 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 4128 GAAGGATCAAAAAGCAACGTCGCTATGAGCGCTTGGTTGCCACAAGCCAGTTATCCCTGT 4187 Query 215 GGTAACTTTTCTGGCACCTCTA-GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273 ||||||||||||| |||||||| | || | ||| || | |||||||||||||||||| Sbjct 4188 GGTAACTTTTCTGACACCTCTAGGTCTAAGATTAAGACAGCATAAAGGATCGATAGGCCA 4247 Query 274 CACTTTC 280 | ||||| Sbjct 4248 CTCTTTC 4254 >seq3 Length=3814 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 3200 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 3141 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| |||| ||| || | | ||| || ||||||||||||| | |||| | | Sbjct 3140 CTTGGGACCGGCTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 3084 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 3083 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 3029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854280341280