Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1401 203 6e-50 seq3 190 4e-46 seq158 178 3e-42 seq1400 150 4e-34 seq9441 113 9e-23 seq2 77.0 6e-12 >seq1401 Length=5644 Score = 203 bits (224), Expect = 6e-50 Identities = 233/312 (75%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89 |||||||| || |||| || ||||| |||| || | | | |||||| ||||||| Sbjct 4525 ACGCCAGTTATCGTGGAGTCGTTGTTGAAATACCACTCTGATCGAATTGGACCTCTAACC 4584 Query 90 --GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147 |||| | | | | | | ||||||||| | | ||| ||||| ||||||||||| Sbjct 4585 TCGGACCATG---ATCTGGTTCAGGGACAGTGCCTGGTGGGTAGTTTAACTGGGGCGGTT 4641 Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| ||||||||||||||||||| | |||||||| ||| ||| || || | | Sbjct 4642 GCCTCCCAAAATGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTG 4701 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 ||||||| ||| ||||| | ||||||| || || || ||| ||||||||||||| Sbjct 4702 TCGAGTGCAAGTGCACAAGGGAGCTTGACTGTGAGACTGACAGGTCGAGCAGGGACGAAA 4761 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 |||||| || ||||||||| | | ||||| | ||||||| ||||||||||| | Sbjct 4762 GTCGGGACTAGTGATCCGGCACCGGCAAGTGGAAGCGGTGTCGCTCAACGGATAAAAGGT 4821 Query 328 ACCCTGGGGATA 339 |||| ||||||| Sbjct 4822 ACCCCGGGGATA 4833 >seq3 Length=3814 Score = 190 bits (210), Expect = 4e-46 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 2820 GGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 2879 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| | | ||||| || ||||| | || | ||| ||||||||||| | | Sbjct 2880 TACGAAGGTGCGCTCAGACCGGTCGGAAATCGGTCGTAGAGTATAAAGGCAAAAGCGCGC 2939 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| || || ||| |||||| |||||||| || |||| |||||||| ||| Sbjct 2940 TTGACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTT 2999 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 3000 CTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 3047 >seq158 Length=3153 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| ||||| |||| |||||||||| Sbjct 945 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCTAAAGTGTAACGGAGGA 886 Query 171 GCCCAAAGATACCCTCAGCTTGGAT-GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | | ||| ||| || || | | | ||| | | || | ||||||| |||| ||| || Sbjct 885 GTTCGAAGGTACGCT-AGATACGGTCGGACATCGTGTTGATAGTGCAATGGCATAAGCGT 827 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | || ||||||| || |||||| |||||| |||||||| || | || |||||||| || Sbjct 826 GCTTAACTGCGAGACTGACAAGTCGAGCAGGTACGAAAGTAGGACATAGTGATCCGGTGG 767 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 766 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 717 >seq1400 Length=5517 Score = 150 bits (166), Expect = 4e-34 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| ||||||||||||| |||||||||| ||| ||||||||||| Sbjct 4608 GGACATTGTTTGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCT 4667 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| || |||| | ||| |||| | | ||||||| ||| ||| || Sbjct 4668 TTCAAAGGTAAGCTCAATACGCTTGGTAACCGTATGAGGAGTGCAATAGCATAAGCTTGC 4727 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || | |||| | ||||||| |||||| ||| || |||||||| ||| Sbjct 4728 TTGACTGTGAGGCAGACAAGCCGAGCAGGGTCGAAAGACGGATATAGTGATCCGGTGGTT 4787 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| | ||||||||| ||| ||||||||| Sbjct 4788 CTGCATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACGCTGGGGATA 4835 >seq9441 Length=272 Score = 113 bits (124), Expect = 9e-23 Identities = 109/136 (80%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCGGACGACGTATAAC 103 |||| ||||| |||||||| ||| ||||||| | |||||||| ||| || | | Sbjct 137 GGAGGCGCTGGTGGGATACCGCCCTGACTGTATTGAAATTCTAACCT-ACGG-GTCTTAT 194 Query 104 CGTTGACGG-GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTA 162 || || ||||||||||| |||||||||||||||||||||||||||| |||| ||| Sbjct 195 CGACCCGGGAGACAGTGTCAGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAGTGTA 254 Query 163 ACGGAGGCGCCCAAAG 178 |||||||||||||||| Sbjct 255 ACGGAGGCGCCCAAAG 270 >seq2 Length=66720 Score = 77.0 bits (84), Expect = 6e-12 Identities = 95/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||| || |||||||| || ||||||| | | ||| || | ||| |||||||||| Sbjct 65071 AGTGTAATGGCAAAAGCTTGCTTGACTGTAAGATATACAAATCGAACAGAGACGAAAGTC 65130 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || | || ||||||| ||||| ||||| || ||||| ||||||||||| ||| Sbjct 65131 GGTCATAGTGATCCGATAATGCTGTGTGGAAAGGTTATCGCT-AACGGATAAAAGGTACG 65189 Query 331 CTGGGGATA 339 || |||||| Sbjct 65190 CTAGGGATA 65198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982262414880