Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1400 176 5e-42 seq3 138 1e-30 seq1401 134 2e-29 seq158 118 1e-24 >seq1400 Length=5517 Score = 176 bits (194), Expect = 5e-42 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||||| | ||||||| |||| ||||||||| || |||||||||| || Sbjct 4460 GGGGTCTTTCCGTCCCGTTGCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGA 4401 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 ||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 4400 GCTCATGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCG 4341 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4340 ACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 4282 >seq3 Length=3814 Score = 138 bits (152), Expect = 1e-30 Identities = 121/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| ||||| || | |||||||||| | | | ||||||||||| Sbjct 2664 CGGGGTCTTTCCGTCTAGCCGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTG 2605 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 2604 AG-TCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 2546 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 2545 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 2514 >seq1401 Length=5644 Score = 134 bits (148), Expect = 2e-29 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||||||||| |||| |||| ||||||| || || | ||||||| | | Sbjct 4451 CGGGGTCTTTTCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCGCCG 4392 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || ||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 4391 AGTCTACGGTTGAGACAGCTGAGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 4332 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| |||| Sbjct 4331 GACAAGGAATTTCGCTACCTTAGGATGGTTA 4301 >seq158 Length=3153 Score = 118 bits (130), Expect = 1e-24 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||||| ||||| |||| | | | ||| ||| |||| Sbjct 1101 GGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGCTGA 1160 Query 84 GCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || ||| | |||||| ||| |||||||||||||||||||||||||| Sbjct 1161 G-TCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1219 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 1220 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547125759495