Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq29 405 8e-111 seq2745 100 4e-19 seq1312 100 4e-19 seq1315 93.3 6e-17 seq346 75.2 2e-11 >seq29 Length=371730 Score = 405 bits (448), Expect = 8e-111 Identities = 247/261 (95%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||| |||||||||||||||||||| ||||| | ||| || ||| ||||||||||| Sbjct 310067 CGATGCATGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGAGCAGTTT-CGTCCAGGCCC 310125 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 310126 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGGCGTTGCAGCGAGCAATCGCGGTCG 310185 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 310186 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 310245 Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 310246 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGGCAGCTTCCGAG 310305 Query 241 CGAGTCTGCTTGGCCGCTTCG 261 |||||||||||||| |||||| Sbjct 310306 CGAGTCTGCTTGGCGGCTTCG 310326 >seq2745 Length=2032 Score = 100 bits (110), Expect = 4e-19 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82 ACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCC 141 ||||||||||| ||||||||||||||||| || || ||| ||||||||| ||| |||| Sbjct 752 ACCTTCTGGTGGCGACGTTGCAGCGAGCAGTCACGCTCGAAGAGGTGGATGACGTTGCCC 693 Query 142 TGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGTACTTTTCCAGG 201 || |||||| || | |||||||| | ||| || |||| | | | | || || ||| Sbjct 692 TGCTCGTCGGCGAGGATCTGCACTTCGATGTGCCGCGGGTCGATGACGGCCTGCTCGAGG 633 Query 202 TAGACCATCGGGTTGCCGAA 221 ||||| ||| | |||||| Sbjct 632 AAGACCGTCGAATCGCCGAA 613 >seq1312 Length=100190 Score = 100 bits (110), Expect = 4e-19 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 |||||| ||||| |||||||| | ||||||||||| || || |||| ||||| ||||| Sbjct 23914 GCCCGGCGCCGGTGCTTCTTCGATCACCTTCTGGTGGCGGCGCTGCATGGAGCAGTCGCG 23973 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| || ||||| || |||||| || | || | ||||||||| || Sbjct 23974 CTCGCCCAGCCAGACGGCGTTCTTGTGTTCGTCGGCGAGGATCTGGATTTCCACGTGGCG 24033 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAA 221 || || ||||||||| |||| || || ||||||||||| Sbjct 24034 CGGATTTTCCAGGTACTTCTCCATATACACTTCAGGGTTGCCGAA 24078 >seq1315 Length=29597 Score = 93.3 bits (102), Expect = 6e-17 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 || |||||| |||||||| |||||||| ||||||||||| || || |||| ||||||||| Sbjct 6065 CATGCCCGGCGCCGGCGCCTCTTCCAGCACCTTCTGGTGGCGTCGCTGCACCGAGCAATC 6124 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 ||| ||| ||||| |||| || |||| | ||||| | || || | ||| | || Sbjct 6125 GCGCTCGAACAGGTAGATGCAGTTGCCCAGCGTGTCGGCGAACACCTGGATTTCGATATG 6184 Query 174 ACGTGGGTTGGTCAGGTACTTTTC 197 || || | |||||| ||||| Sbjct 6185 GCGCGGACGCGACAGGTATTTTTC 6208 >seq346 Length=37059 Score = 75.2 bits (82), Expect = 2e-11 Identities = 104/146 (71%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 ||||||||| ||||| |||||||| | || || || || || || || | ||||||||| Sbjct 30830 CAGGCCCGGCGCCGGGGCTTCTTCGACGACTTTTTGATGGCGGCGCTGGATCGAGCAATC 30889 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 ||| || |||| | | ||| || || ||||| | || || | |||||||| Sbjct 30890 GCGCTCATTGAGGTACAGGCAGTGACCGTGCTGGTCGGCGAACACCTGGATCTCCACGTG 30949 Query 174 ACGTGGGTTGGTCAGGTACTTTTCCA 199 ||| || ||| || |||||||||| Sbjct 30950 ACGCGGCTTGAGCAAATACTTTTCCA 30975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735900144350